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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS08625 and DZA65_RS08630 are separated by 219 nucleotides
DZA65_RS08630 and DZA65_RS08635 are separated by 105 nucleotides
DZA65_RS08635 and DZA65_RS08640 are separated by 11 nucleotides
DZA65_RS08640 and DZA65_RS08645 are separated by 46 nucleotides
DZA65_RS08625: DZA65_RS08625 - GGDEF domain-containing protein, at 1,825,780 to 1,827,339
_RS08625
DZA65_RS08630: DZA65_RS08630 - iron permease, at 1,827,559 to 1,828,404
_RS08630
DZA65_RS08635: DZA65_RS08635 - iron uptake system protein EfeO, at 1,828,510 to 1,829,631
_RS08635
DZA65_RS08640: DZA65_RS08640 - deferrochelatase/peroxidase EfeB, at 1,829,643 to 1,830,956
_RS08640
DZA65_RS08645: DZA65_RS08645 - DUF1272 domain-containing protein, at 1,831,003 to 1,831,233
_RS08645
Group
Condition
DZA65
_RS08625
DZA65
_RS08630
DZA65
_RS08635
DZA65
_RS08640
DZA65
_RS08645
plant
Stem-Norland
+0.1
-0.6
-0.2
-0.3
-0.6
plant
Stem-Upstate
-0.1
-0.1
+0.1
-0.8
-0.3
plant
Stem-Norland
+0.5
-0.0
-0.4
-0.4
-0.7
control
LB
+0.1
-0.5
-0.2
-0.5
+0.1
plant
Upstate
+0.1
-0.3
-0.1
-0.2
-0.3
stress
1.88mM_PTB
+0.1
-0.2
+0.2
-0.4
-0.5
carbon source
M9+polygalacturonate
-0.0
+0.2
-0.1
+0.0
-0.6
plant
Stem-Atlantic
-0.1
+0.0
+0.1
-0.7
+0.2
plant
Stem-Norland
+0.6
-0.1
-0.1
-1.0
+0.1
stress
3.75mM_PTB
+0.1
-0.1
+0.2
-0.1
-0.4
plant
Stem-Upstate
+0.4
+0.1
-0.7
-0.6
+0.4
plant
Upstate
-0.1
-0.3
-0.2
-0.2
+0.4
plant
Stem-Atlantic
+0.2
+0.0
+0.2
-0.9
+0.3
plant
Norland
+0.0
-0.1
+0.1
+0.2
-0.5
carbon source
M9+starch
+0.0
+0.2
+0.2
-0.3
-0.4
stress
1.88mM_PTB
+0.1
-0.0
+0.0
+0.4
-0.7
plant
Atlantic
-0.1
-0.3
+0.0
-0.1
+0.5
plant
Stem-Norland
-0.1
-0.2
-0.3
+0.5
+0.0
carbon source
M9+sucrose
-0.1
+0.1
+0.1
-0.4
+0.3
plant
Stem-Norland
+0.2
+0.3
+0.2
-0.1
-0.4
plant
Stem-Norland
-0.1
-0.3
-0.0
+0.5
+0.2
plant
Stem-Atlantic
+0.2
+0.4
+0.2
-0.7
+0.4
plant
Norland
+0.1
+0.0
-0.2
+0.0
+0.7
plant
Upstate
+0.1
-0.2
-0.1
-0.0
+0.7
plant
Atlantic
-0.0
+0.2
-0.1
-0.3
+0.8
plant
Stem-Upstate
-0.0
-0.1
+0.4
+0.5
-0.2
plant
Stem-Upstate
+0.2
-0.1
-0.2
+0.3
+0.3
plant
Norland
+0.0
-0.0
+0.1
-0.1
+1.0
plant
Stem-Upstate
+0.2
-0.2
+0.2
+0.4
+0.5
plant
Stem-Upstate
+0.2
+0.2
+0.1
+0.0
+0.6
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