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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS08070 and DZA65_RS08075 are separated by 158 nucleotides
DZA65_RS08075 and DZA65_RS08080 are separated by 118 nucleotides
DZA65_RS08080 and DZA65_RS08085 are separated by 4 nucleotides
DZA65_RS08085 and DZA65_RS08090 are separated by 1 nucleotides
DZA65_RS08070: DZA65_RS08070 - diaminobutyrate--2-oxoglutarate transaminase, at 1,686,256 to 1,687,659
_RS08070
DZA65_RS08075: DZA65_RS08075 - TonB-dependent receptor, at 1,687,818 to 1,689,932
_RS08075
DZA65_RS08080: DZA65_RS08080 - AcsD protein, at 1,690,051 to 1,691,922
_RS08080
DZA65_RS08085: DZA65_RS08085 - type III PLP-dependent enzyme, at 1,691,927 to 1,693,174
_RS08085
DZA65_RS08090: DZA65_RS08090 - DHA2 family efflux MFS transporter permease subunit, at 1,693,176 to 1,694,606
_RS08090
Group
Condition
DZA65
_RS08070
DZA65
_RS08075
DZA65
_RS08080
DZA65
_RS08085
DZA65
_RS08090
plant
Stem-Norland
-0.5
-1.1
-0.2
-0.3
-1.6
plant
Stem-Norland
-0.5
-1.1
-0.0
+0.0
-0.9
plant
Stem-Atlantic
-0.4
-0.5
-0.0
+0.1
-1.4
plant
Stem-Atlantic
-0.3
-0.8
-0.0
+0.0
-1.1
plant
Stem-Norland
-0.4
-1.1
-0.3
+0.1
-0.3
plant
Stem-Atlantic
-0.2
-0.8
-0.1
-0.2
-0.7
plant
Stem-Norland
-0.8
-1.0
-0.1
-0.0
-0.0
plant
Stem-Atlantic
-0.3
-0.9
-0.1
-0.0
-0.5
plant
Stem-Upstate
-0.2
-0.6
+0.2
+0.1
-1.2
plant
Stem-Norland
-0.6
-0.9
+0.3
+0.1
-0.7
plant
Stem-Upstate
-0.2
-0.7
-0.0
-0.2
-0.5
plant
Stem-Norland
-0.3
-0.7
-0.0
+0.1
-0.6
plant
Stem-Atlantic
-0.1
-0.5
+0.2
+0.0
-1.1
plant
Stem-Upstate
-0.3
-0.9
+0.0
-0.0
-0.2
plant
Stem-Upstate
-0.9
-1.2
+0.1
-0.0
+0.7
plant
Stem-Norland
-0.3
-0.7
-0.3
+0.3
+0.1
plant
Stem-Upstate
-0.2
-0.9
+0.1
-0.1
+0.1
plant
Stem-Norland
+0.0
-0.9
+0.1
+0.2
-0.1
plant
Stem-Upstate
-0.3
-0.4
+0.1
+0.1
-0.2
stress
1.88mM_PTB
+0.1
-0.1
-0.0
+0.1
-0.8
plant
Stem-Atlantic
-0.0
-0.5
+0.0
+0.4
-0.5
plant
Stem-Upstate
-0.0
-1.0
+0.5
-0.4
+0.4
plant
Atlantic
+0.3
+0.1
+0.2
+0.1
-0.6
plant
Atlantic
+0.2
+0.2
+0.1
-0.1
-0.4
plant
Atlantic
+0.3
+0.1
+0.2
+0.3
+0.1
carbon source
M9+glycerol
+0.3
+0.3
+0.1
+0.0
+0.3
plant
Upstate
+0.4
+0.3
+0.3
+0.0
+0.2
carbon source
M9+sucrose
+0.5
+0.6
+0.2
+0.2
-0.0
carbon source
M9+glycerol
+0.5
+0.3
+0.0
+0.1
+0.4
carbon source
M9+sucrose
+0.6
+0.7
+0.3
+0.1
+0.1
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DZA65_RS08080
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