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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS08025 and DZA65_RS08030 are separated by 2 nucleotides
DZA65_RS08030 and DZA65_RS08035 are separated by 1355 nucleotides
DZA65_RS08035 and DZA65_RS08040 are separated by 26 nucleotides
DZA65_RS08040 and DZA65_RS08045 overlap by 20 nucleotides
DZA65_RS08025: DZA65_RS08025 - phosphonate ABC transporter, permease protein PhnE, at 1,675,106 to 1,675,969
_RS08025
DZA65_RS08030: DZA65_RS08030 - phosphonate ABC transporter, permease protein PhnE, at 1,675,972 to 1,676,865
_RS08030
DZA65_RS08035: DZA65_RS08035 - CRISPR-associated endonuclease Cas2, at 1,678,221 to 1,678,514
_RS08035
DZA65_RS08040: DZA65_RS08040 - type I-C CRISPR-associated endonuclease Cas1, at 1,678,541 to 1,679,566
_RS08040
DZA65_RS08045: DZA65_RS08045 - CRISPR-associated protein Cas4, at 1,679,547 to 1,680,188
_RS08045
Group
Condition
DZA65
_RS08025
DZA65
_RS08030
DZA65
_RS08035
DZA65
_RS08040
DZA65
_RS08045
plant
Stem-Atlantic
-0.0
-0.3
-0.3
-0.0
-0.2
carbon source
M9+polygalacturonate
-0.1
-0.1
-0.3
+0.1
-0.1
plant
Stem-Norland
-0.2
+0.1
-0.3
-0.2
+0.1
plant
Stem-Upstate
+0.2
-0.2
-0.2
-0.2
-0.1
stress
3.75mM_PTB
-0.1
+0.2
-0.6
-0.0
+0.0
plant
Stem-Upstate
+0.1
+0.3
-0.7
+0.1
-0.2
stress
1.88mM_PTB
-0.1
+0.1
-0.4
-0.1
+0.1
plant
Norland
-0.1
-0.3
+0.1
-0.2
+0.0
control
LB
+0.0
-0.2
-0.2
+0.1
+0.2
carbon source
M9+sucrose
-0.2
-0.1
+0.2
+0.1
-0.1
carbon source
M9+glycerol
-0.0
+0.3
-0.0
-0.1
-0.3
plant
Norland
+0.1
+0.2
-0.2
+0.1
-0.3
control
PDB
-0.1
+0.1
-0.4
+0.1
+0.1
plant
Stem-Atlantic
+0.0
-0.0
+0.3
-0.2
-0.1
plant
Stem-Norland
+0.1
-0.5
+0.2
+0.0
+0.2
plant
Norland
-0.1
-0.1
+0.3
+0.1
-0.1
plant
Stem-Atlantic
+0.1
-0.2
+0.0
+0.2
-0.1
plant
Stem-Atlantic
-0.0
-0.2
+0.5
-0.0
-0.1
control
LB
-0.0
-0.2
+0.3
-0.0
+0.1
plant
Stem-Upstate
+0.2
-0.1
-0.3
+0.2
+0.2
plant
Upstate
+0.0
-0.1
+0.3
+0.1
-0.1
plant
Atlantic
-0.0
-0.1
+0.3
+0.0
+0.2
plant
Stem-Atlantic
+0.0
+0.1
+0.4
-0.1
+0.1
stress
1.88mM_PTB
+0.0
+0.2
+0.1
-0.1
+0.4
plant
Stem-Norland
-0.2
-0.1
+0.6
+0.3
+0.0
plant
Stem-Upstate
+0.1
+0.0
+0.5
+0.0
+0.1
plant
Stem-Norland
+0.2
-0.4
+0.4
+0.2
+0.4
plant
Stem-Upstate
+0.2
+0.3
-0.0
+0.2
+0.4
plant
Stem-Norland
-0.1
+0.1
+0.9
-0.0
+0.2
plant
Stem-Upstate
+0.1
-0.0
+0.8
+0.3
+0.2
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