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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS07915 and DZA65_RS07920 are separated by 87 nucleotides
DZA65_RS07920 and DZA65_RS07925 are separated by 921 nucleotides
DZA65_RS07925 and DZA65_RS07930 are separated by 317 nucleotides
DZA65_RS07930 and DZA65_RS07935 are separated by 410 nucleotides
DZA65_RS07915: DZA65_RS07915 - aspartate/glutamate racemase family protein, at 1,652,072 to 1,652,800
_RS07915
DZA65_RS07920: DZA65_RS07920 - anaerobic C4-dicarboxylate transporter, at 1,652,888 to 1,654,228
_RS07920
DZA65_RS07925: DZA65_RS07925 - aminobutyraldehyde dehydrogenase, at 1,655,150 to 1,656,586
_RS07925
DZA65_RS07930: DZA65_RS07930 - putrescine aminotransferase, at 1,656,904 to 1,658,322
_RS07930
DZA65_RS07935: DZA65_RS07935 - LysE family translocator, at 1,658,733 to 1,659,377
_RS07935
Group
Condition
DZA65
_RS07915
DZA65
_RS07920
DZA65
_RS07925
DZA65
_RS07930
DZA65
_RS07935
plant
Stem-Upstate
-2.8
+0.1
-0.1
+0.3
-0.3
plant
Stem-Upstate
-1.1
-0.1
+0.2
-0.2
-0.2
plant
Stem-Atlantic
-1.1
-0.0
-0.1
-0.1
-0.1
plant
Stem-Norland
-1.1
-0.1
-0.1
+0.3
-0.4
control
PDB
-0.8
-0.1
-0.0
-0.1
-0.1
plant
Stem-Norland
-0.5
+0.0
-0.5
+0.0
-0.1
carbon source
M9+sucrose
-0.7
-0.1
-0.2
-0.2
+0.0
plant
Atlantic
-1.0
-0.1
-0.0
+0.2
-0.2
plant
Stem-Norland
-0.8
-0.1
-0.1
+0.1
-0.1
plant
Stem-Upstate
-0.4
-0.1
-0.3
-0.2
+0.0
plant
Stem-Norland
-0.5
-0.1
-0.1
-0.2
-0.0
plant
Stem-Atlantic
-0.7
-0.1
-0.0
-0.1
+0.0
plant
Norland
-0.6
+0.0
-0.0
-0.3
+0.1
plant
Stem-Atlantic
-1.0
+0.1
-0.1
+0.3
-0.1
carbon source
M9+starch
-0.4
-0.2
+0.2
-0.3
+0.1
plant
Upstate
-0.7
-0.1
-0.1
+0.1
+0.1
plant
Norland
-0.8
+0.1
+0.1
-0.1
+0.0
plant
Stem-Upstate
-0.5
+0.3
-0.2
-0.0
-0.1
plant
Stem-Upstate
-0.9
+0.1
+0.0
+0.4
-0.1
plant
Atlantic
-0.6
-0.2
+0.3
+0.1
+0.0
plant
Stem-Atlantic
-0.5
-0.1
+0.0
+0.3
+0.1
plant
Upstate
-0.3
+0.1
-0.1
-0.0
+0.4
control
LB
-0.1
+0.2
-0.1
-0.2
+0.3
plant
Stem-Upstate
-0.4
+0.4
-0.0
+0.0
+0.1
plant
Upstate
-0.4
-0.0
+0.0
+0.3
+0.3
plant
Norland
+0.4
+0.0
+0.3
-0.3
-0.0
control
LB
+0.6
-0.0
-0.0
+0.1
-0.2
control
LB
+0.7
+0.1
-0.1
-0.0
+0.1
stress
1.88mM_PTB
+0.7
-0.0
+0.1
+0.3
-0.2
control
LB
+0.5
+0.2
+0.1
+0.2
-0.1
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