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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS07395 and DZA65_RS07400 are separated by 157 nucleotides
DZA65_RS07400 and DZA65_RS07405 are separated by 137 nucleotides
DZA65_RS07405 and DZA65_RS07410 are separated by 136 nucleotides
DZA65_RS07410 and DZA65_RS07415 are separated by 178 nucleotides
DZA65_RS07395: DZA65_RS07395 - alpha/beta hydrolase, at 1,538,806 to 1,539,666
_RS07395
DZA65_RS07400: DZA65_RS07400 - helix-turn-helix domain-containing protein, at 1,539,824 to 1,540,774
_RS07400
DZA65_RS07405: DZA65_RS07405 - nuclear transport factor 2 family protein, at 1,540,912 to 1,541,370
_RS07405
DZA65_RS07410: DZA65_RS07410 - hypothetical protein, at 1,541,507 to 1,541,863
_RS07410
DZA65_RS07415: DZA65_RS07415 - glutaredoxin-dependent arsenate reductase, at 1,542,042 to 1,542,467
_RS07415
Group
Condition
DZA65
_RS07395
DZA65
_RS07400
DZA65
_RS07405
DZA65
_RS07410
DZA65
_RS07415
control
PDB
-0.1
-0.2
-0.1
-0.3
-0.2
control
PDB
+0.1
-0.3
-0.1
-0.3
-0.1
plant
Atlantic
-0.1
+0.1
-0.2
-0.1
-0.2
plant
Stem-Norland
-0.0
-0.1
-0.2
+0.2
-0.2
plant
Upstate
-0.1
+0.1
+0.0
-0.0
-0.3
plant
Atlantic
-0.1
+0.1
-0.0
-0.0
-0.3
plant
Upstate
-0.2
+0.1
+0.2
-0.1
-0.4
plant
Stem-Upstate
-0.0
+0.2
-0.3
+0.2
-0.1
stress
3.75mM_PTB
+0.1
-0.2
-0.2
-0.2
+0.3
plant
Upstate
+0.0
+0.0
-0.1
+0.2
-0.2
plant
Upstate
-0.1
+0.2
-0.1
+0.1
+0.0
plant
Stem-Atlantic
+0.2
+0.1
-0.2
+0.1
-0.0
plant
Stem-Norland
-0.2
+0.1
-0.1
+0.1
+0.2
plant
Upstate
-0.1
+0.1
+0.4
-0.0
-0.2
control
LB
+0.1
+0.1
-0.2
-0.0
+0.2
plant
Stem-Upstate
+0.1
+0.2
+0.2
-0.1
-0.1
plant
Norland
-0.1
+0.1
+0.1
+0.1
+0.2
plant
Norland
-0.2
+0.1
+0.2
+0.2
-0.0
plant
Stem-Upstate
-0.1
+0.1
+0.2
-0.0
+0.2
plant
Stem-Norland
+0.1
-0.2
+0.1
+0.5
-0.1
plant
Stem-Norland
-0.2
+0.3
-0.0
+0.2
+0.2
stress
1.88mM_PTB
+0.1
+0.2
-0.0
+0.2
+0.1
plant
Stem-Atlantic
+0.0
+0.1
+0.1
+0.2
+0.1
plant
Atlantic
-0.1
+0.1
+0.3
+0.1
+0.2
plant
Stem-Atlantic
+0.3
+0.1
-0.0
+0.1
+0.2
plant
Stem-Upstate
+0.1
-0.0
+0.0
+0.2
+0.5
plant
Stem-Atlantic
+0.1
-0.1
+0.4
+0.3
+0.3
plant
Stem-Atlantic
+0.1
+0.1
+0.3
+0.2
+0.4
plant
Stem-Upstate
-0.4
+0.2
+0.3
+0.4
+0.6
plant
Stem-Upstate
+0.3
+0.1
+0.6
-0.1
+0.4
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