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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS07210 and DZA65_RS07215 are separated by 162 nucleotides
DZA65_RS07215 and DZA65_RS07220 are separated by 100 nucleotides
DZA65_RS07220 and DZA65_RS07225 are separated by 247 nucleotides
DZA65_RS07225 and DZA65_RS07230 are separated by 346 nucleotides
DZA65_RS07210: DZA65_RS07210 - hypothetical protein, at 1,499,761 to 1,500,273
_RS07210
DZA65_RS07215: DZA65_RS07215 - lactonase family protein, at 1,500,436 to 1,501,578
_RS07215
DZA65_RS07220: DZA65_RS07220 - DNA starvation/stationary phase protection protein, at 1,501,679 to 1,502,164
_RS07220
DZA65_RS07225: DZA65_RS07225 - proline iminopeptidase-family hydrolase, at 1,502,412 to 1,503,323
_RS07225
DZA65_RS07230: DZA65_RS07230 - hypothetical protein, at 1,503,670 to 1,503,906
_RS07230
Group
Condition
DZA65
_RS07210
DZA65
_RS07215
DZA65
_RS07220
DZA65
_RS07225
DZA65
_RS07230
plant
Stem-Atlantic
-0.7
+0.1
-0.2
-0.0
-0.6
control
LB
-0.0
+0.0
-0.2
-0.3
-0.4
stress
3.75mM_PTB
-0.3
+0.0
-0.1
-0.3
-0.1
stress
3.75mM_PTB
+0.2
+0.0
-0.2
-0.3
-0.5
plant
Stem-Upstate
-0.4
-0.0
-0.1
+0.2
-0.3
plant
Upstate
-0.3
+0.0
+0.1
+0.1
-0.4
plant
Upstate
-0.3
+0.1
-0.1
+0.1
-0.4
plant
Stem-Upstate
-0.1
+0.1
-0.2
+0.3
-0.5
plant
Atlantic
-0.5
+0.2
-0.1
-0.1
+0.0
carbon source
M9+glycerol
-0.2
-0.0
+0.2
+0.2
-0.6
plant
Stem-Norland
+0.2
-0.2
-0.3
+0.4
-0.2
plant
Stem-Upstate
-0.3
+0.2
-0.2
-0.0
+0.4
plant
Stem-Upstate
+0.6
-0.2
-0.3
-0.1
+0.2
plant
Stem-Atlantic
-0.2
-0.1
-0.0
+0.6
-0.0
control
LB
+0.3
+0.2
-0.0
-0.1
-0.3
plant
Stem-Norland
+0.6
+0.1
+0.1
-0.5
-0.2
plant
Stem-Atlantic
+0.2
-0.1
+0.3
+0.0
-0.2
plant
Stem-Norland
+0.5
-0.1
-0.1
-0.3
+0.3
plant
Stem-Atlantic
+0.1
-0.0
-0.2
+0.5
-0.0
control
LB
+0.1
-0.1
+0.0
+0.5
-0.2
plant
Norland
-0.3
+0.0
+0.3
+0.1
+0.2
plant
Atlantic
-0.2
-0.0
+0.3
+0.2
+0.1
control
PDB
-0.2
+0.1
+0.1
+0.2
+0.2
plant
Stem-Norland
+0.6
-0.2
+0.1
+0.2
-0.3
plant
Stem-Atlantic
+0.4
+0.0
-0.1
+0.4
-0.2
plant
Atlantic
-0.1
+0.1
+0.3
+0.1
+0.2
plant
Upstate
+0.1
+0.0
-0.1
+0.5
+0.4
plant
Stem-Upstate
-0.0
+0.1
-0.4
+1.5
+0.1
plant
Stem-Upstate
-0.4
+0.1
-0.1
+1.3
+0.5
plant
Stem-Upstate
+0.9
+0.3
+0.1
-0.1
+1.1
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DZA65_RS07220
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