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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS07190 and DZA65_RS07195 are separated by 9 nucleotides
DZA65_RS07195 and DZA65_RS07200 overlap by 1 nucleotides
DZA65_RS07200 and DZA65_RS07205 are separated by 166 nucleotides
DZA65_RS07205 and DZA65_RS07210 are separated by 178 nucleotides
DZA65_RS07190: DZA65_RS07190 - YjbF family lipoprotein, at 1,494,912 to 1,495,586
_RS07190
DZA65_RS07195: DZA65_RS07195 - hypothetical protein, at 1,495,596 to 1,496,375
_RS07195
DZA65_RS07200: DZA65_RS07200 - YjbH domain-containing protein, at 1,496,375 to 1,498,519
_RS07200
DZA65_RS07205: DZA65_RS07205 - GntR family transcriptional regulator, at 1,498,686 to 1,499,582
_RS07205
DZA65_RS07210: DZA65_RS07210 - hypothetical protein, at 1,499,761 to 1,500,273
_RS07210
Group
Condition
DZA65
_RS07190
DZA65
_RS07195
DZA65
_RS07200
DZA65
_RS07205
DZA65
_RS07210
plant
Stem-Upstate
+0.2
-0.3
+0.1
-1.0
-0.1
plant
Stem-Atlantic
-0.4
-0.4
+0.1
-0.1
-0.1
plant
Atlantic
-0.1
-0.1
+0.1
-0.2
-0.5
plant
Upstate
-0.1
+0.1
-0.1
-0.3
-0.3
plant
Upstate
+0.1
-0.2
-0.0
-0.1
-0.3
plant
Stem-Atlantic
-0.3
+0.1
+0.1
-0.2
-0.2
plant
Stem-Atlantic
+0.2
-0.2
+0.1
+0.2
-0.7
stress
3.75mM_PTB
+0.2
-0.0
-0.0
-0.5
-0.0
plant
Stem-Upstate
-0.1
+0.1
-0.0
+0.1
-0.4
plant
Stem-Upstate
-0.2
-0.1
+0.2
+0.2
-0.3
plant
Atlantic
+0.2
-0.1
-0.1
+0.1
-0.2
plant
Stem-Norland
-0.2
-0.2
-0.0
-0.4
+0.6
stress
3.75mM_PTB
-0.1
+0.1
-0.1
-0.3
+0.2
plant
Norland
+0.2
-0.1
-0.0
-0.3
+0.1
stress
1.88mM_PTB
+0.3
-0.2
-0.1
-0.2
+0.1
plant
Stem-Atlantic
-0.1
-0.1
+0.1
-0.2
+0.4
stress
1.88mM_PTB
+0.4
-0.1
-0.1
-0.2
-0.1
stress
1.88mM_PTB
+0.3
-0.1
-0.1
-0.2
+0.1
stress
3.75mM_PTB
+0.3
-0.0
+0.1
+0.1
-0.3
plant
Upstate
+0.1
-0.1
-0.0
-0.2
+0.3
plant
Stem-Atlantic
-0.1
+0.1
+0.2
+0.2
-0.2
plant
Stem-Upstate
+0.2
-0.2
+0.0
-0.2
+0.6
plant
Stem-Norland
+0.2
-0.0
-0.0
-0.2
+0.6
plant
Stem-Norland
+0.1
+0.4
+0.1
+0.2
-0.3
carbon source
M9+starch
+0.3
+0.0
-0.0
+0.2
+0.2
plant
Stem-Norland
+0.2
+0.2
+0.1
+0.4
-0.1
carbon source
M9+polygalacturonate
+0.1
+0.3
+0.1
+0.0
+0.3
control
LB
+0.5
+0.1
-0.0
-0.0
+0.3
plant
Stem-Norland
+0.2
+0.1
-0.0
+0.1
+0.5
plant
Stem-Upstate
+0.6
-0.1
+0.2
-0.3
+0.9
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