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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS06790 and DZA65_RS06795 are separated by 28 nucleotides
DZA65_RS06795 and DZA65_RS06800 are separated by 31 nucleotides
DZA65_RS06800 and DZA65_RS06805 are separated by 69 nucleotides
DZA65_RS06805 and DZA65_RS06810 overlap by 7 nucleotides
DZA65_RS06790: DZA65_RS06790 - DUF1722 domain-containing protein, at 1,409,831 to 1,410,790
_RS06790
DZA65_RS06795: DZA65_RS06795 - deoxyribodipyrimidine photo-lyase, at 1,410,819 to 1,412,249
_RS06795
DZA65_RS06800: DZA65_RS06800 - type 2 GTP cyclohydrolase I, at 1,412,281 to 1,413,024
_RS06800
DZA65_RS06805: DZA65_RS06805 - 5-oxoprolinase subunit PxpB, at 1,413,094 to 1,413,753
_RS06805
DZA65_RS06810: DZA65_RS06810 - biotin-dependent carboxyltransferase family protein, at 1,413,747 to 1,414,676
_RS06810
Group
Condition
DZA65
_RS06790
DZA65
_RS06795
DZA65
_RS06800
DZA65
_RS06805
DZA65
_RS06810
plant
Stem-Upstate
-0.2
-0.1
-0.6
-1.5
-0.3
plant
Stem-Upstate
+0.1
-0.0
-0.4
-1.1
-0.5
plant
Stem-Upstate
-0.1
-0.1
-0.4
-1.0
-0.4
stress
3.75mM_PTB
-0.3
-0.0
-0.3
-0.5
+0.0
plant
Stem-Atlantic
-0.0
-0.0
-0.2
-0.3
-0.5
plant
Atlantic
+0.1
-0.2
-0.7
+0.1
-0.2
plant
Upstate
-0.1
-0.1
-0.2
-0.3
-0.2
plant
Stem-Atlantic
+0.2
-0.0
+0.0
-0.8
-0.2
plant
Stem-Norland
+0.1
+0.1
-0.7
-0.2
-0.2
plant
Upstate
+0.2
-0.0
-0.1
-0.6
-0.3
control
PDB
+0.1
+0.0
-0.3
-0.4
+0.0
control
LB
+0.1
-0.1
+0.2
-0.3
-0.2
plant
Stem-Norland
+0.2
+0.1
-0.3
-0.1
-0.2
carbon source
M9+glycerol
+0.1
+0.1
-0.5
-0.3
+0.2
plant
Stem-Atlantic
+0.1
-0.0
+0.3
-0.6
+0.1
stress
1.88mM_PTB
+0.3
-0.0
-0.2
+0.1
-0.3
stress
1.88mM_PTB
-0.0
-0.1
-0.5
+0.1
+0.2
control
LB
+0.2
-0.1
-0.0
+0.2
-0.5
control
PDB
+0.2
+0.1
-0.4
-0.2
+0.2
plant
Stem-Upstate
+0.4
-0.0
+0.4
-0.5
-0.3
plant
Stem-Atlantic
-0.1
+0.4
-0.3
-0.1
+0.2
plant
Stem-Upstate
+0.3
+0.3
-0.2
-0.1
-0.1
plant
Stem-Upstate
+0.1
+0.1
-0.4
+0.1
+0.3
carbon source
M9+glycerol
+0.2
-0.1
+0.3
+0.1
-0.2
plant
Stem-Norland
+0.1
-0.4
-0.1
+0.6
+0.1
plant
Stem-Norland
+0.0
+0.2
+0.6
-0.0
-0.4
plant
Stem-Norland
+0.1
-0.0
-0.1
+0.5
-0.1
control
PDB
+0.0
+0.2
+0.5
+0.3
-0.2
carbon source
M9+sucrose
+0.1
+0.1
+0.3
+0.3
-0.0
plant
Atlantic
-0.1
-0.0
+1.1
+0.2
-0.0
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