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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS06375 and DZA65_RS06380 are separated by 178 nucleotides
DZA65_RS06380 and DZA65_RS06385 overlap by 1 nucleotides
DZA65_RS06385 and DZA65_RS06390 are separated by 244 nucleotides
DZA65_RS06390 and DZA65_RS06395 are separated by 19 nucleotides
DZA65_RS06375: DZA65_RS06375 - ABC transporter substrate-binding protein, at 1,328,620 to 1,329,729
_RS06375
DZA65_RS06380: DZA65_RS06380 - amino acid ABC transporter permease, at 1,329,908 to 1,330,753
_RS06380
DZA65_RS06385: DZA65_RS06385 - transporter substrate-binding domain-containing protein, at 1,330,753 to 1,331,574
_RS06385
DZA65_RS06390: DZA65_RS06390 - galactose/methyl galactoside ABC transporter permease MglC, at 1,331,819 to 1,332,829
_RS06390
DZA65_RS06395: DZA65_RS06395 - galactose/methyl galactoside ABC transporter ATP-binding protein MglA, at 1,332,849 to 1,334,369
_RS06395
Group
Condition
DZA65
_RS06375
DZA65
_RS06380
DZA65
_RS06385
DZA65
_RS06390
DZA65
_RS06395
plant
Stem-Atlantic
-0.0
-0.1
-0.4
+0.1
-0.0
plant
Stem-Upstate
+0.1
-0.3
-0.2
-0.1
+0.0
plant
Stem-Upstate
+0.1
-0.3
-0.0
-0.1
+0.1
plant
Stem-Atlantic
+0.1
-0.0
-0.3
-0.0
+0.1
plant
Stem-Norland
+0.1
-0.2
+0.2
-0.0
-0.1
carbon source
M9+sucrose
-0.1
-0.2
+0.0
+0.0
+0.2
plant
Stem-Norland
-0.0
-0.1
-0.2
+0.2
+0.1
carbon source
M9+polygalacturonate
+0.2
-0.1
+0.1
-0.1
-0.1
carbon source
M9+glycerol
-0.1
-0.2
+0.1
+0.2
+0.0
plant
Stem-Upstate
+0.0
-0.1
+0.2
-0.1
-0.0
stress
1.88mM_PTB
-0.1
+0.2
+0.1
+0.1
-0.2
plant
Stem-Atlantic
-0.0
+0.2
-0.2
+0.0
+0.2
plant
Stem-Norland
+0.0
-0.3
-0.2
+0.1
+0.4
plant
Stem-Atlantic
+0.1
-0.0
-0.2
+0.1
+0.2
control
LB
+0.1
+0.1
-0.2
+0.0
+0.2
plant
Stem-Upstate
-0.2
+0.1
-0.2
+0.4
+0.2
stress
3.75mM_PTB
+0.1
+0.2
-0.1
+0.2
-0.1
stress
3.75mM_PTB
-0.0
+0.4
-0.1
+0.0
-0.1
plant
Norland
+0.2
+0.1
+0.1
-0.0
-0.1
stress
1.88mM_PTB
+0.0
+0.3
-0.0
+0.1
-0.1
plant
Stem-Upstate
-0.2
-0.1
+0.0
+0.2
+0.5
plant
Norland
-0.0
+0.2
+0.1
+0.2
+0.0
plant
Upstate
-0.0
+0.3
+0.2
+0.0
+0.1
carbon source
M9+sucrose
+0.1
+0.1
+0.1
+0.1
+0.1
carbon source
M9+sucrose
+0.1
-0.1
+0.2
+0.1
+0.2
plant
Upstate
+0.0
+0.1
+0.2
+0.1
+0.2
control
LB
+0.0
+0.1
+0.2
+0.0
+0.3
plant
Upstate
+0.1
+0.1
+0.5
+0.0
+0.1
plant
Stem-Norland
+0.1
+0.2
+0.3
+0.1
+0.2
plant
Stem-Norland
+0.2
+0.1
+0.2
+0.0
+0.5
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DZA65_RS06385
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