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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS06285 and DZA65_RS06290 are separated by 1133 nucleotides
DZA65_RS06290 and DZA65_RS06295 are separated by 98 nucleotides
DZA65_RS06295 and DZA65_RS06300 overlap by 1 nucleotides
DZA65_RS06300 and DZA65_RS06305 overlap by 17 nucleotides
DZA65_RS06285: DZA65_RS06285 - MFS transporter, at 1,308,552 to 1,308,821
_RS06285
DZA65_RS06290: DZA65_RS06290 - isochorismate synthase MenF, at 1,309,955 to 1,311,283
_RS06290
DZA65_RS06295: DZA65_RS06295 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 1,311,382 to 1,313,058
_RS06295
DZA65_RS06300: DZA65_RS06300 - 2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase, at 1,313,058 to 1,313,849
_RS06300
DZA65_RS06305: DZA65_RS06305 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 1,313,833 to 1,314,690
_RS06305
Group
Condition
DZA65
_RS06285
DZA65
_RS06290
DZA65
_RS06295
DZA65
_RS06300
DZA65
_RS06305
plant
Stem-Atlantic
-0.4
-0.4
-0.9
-1.4
-1.4
plant
Stem-Atlantic
-0.3
-0.4
-0.6
-0.7
-0.8
plant
Stem-Upstate
+0.1
+0.2
-0.8
-0.6
-1.1
plant
Stem-Upstate
+0.2
-0.2
-0.3
-0.7
-1.1
plant
Stem-Atlantic
-0.2
+0.0
-0.3
-0.7
-1.0
plant
Stem-Atlantic
-0.4
-0.1
-0.8
-0.6
-0.4
plant
Stem-Atlantic
-0.2
+0.1
-0.4
-0.8
-0.6
plant
Stem-Norland
-0.2
+0.1
-0.4
-0.8
-0.8
plant
Stem-Upstate
-0.3
-0.0
-0.7
-0.7
-0.2
plant
Stem-Atlantic
-0.1
+0.0
-0.7
-0.6
-0.6
plant
Stem-Norland
+0.1
-0.2
-0.7
-0.4
-0.8
plant
Stem-Norland
-0.4
-0.1
-0.3
-0.7
-0.5
plant
Stem-Norland
-0.3
+0.0
-0.4
-0.0
-1.0
plant
Stem-Upstate
+0.0
+0.0
-0.1
-1.0
-0.5
plant
Stem-Atlantic
+0.4
+0.1
-0.3
-0.6
-0.8
plant
Stem-Norland
-0.5
-0.1
-0.2
-0.5
+0.2
plant
Stem-Norland
+0.2
+0.0
-0.5
-0.3
-0.5
plant
Stem-Upstate
-0.3
-0.3
-0.2
-0.0
-0.3
plant
Stem-Norland
+0.4
-0.6
-0.4
-0.3
-0.1
plant
Stem-Upstate
-0.7
+0.1
-0.1
-0.9
+0.6
plant
Stem-Norland
+0.1
+0.2
-0.1
-1.3
+0.1
plant
Upstate
-0.4
+0.0
-0.2
-0.0
-0.4
carbon source
M9+starch
-0.4
+0.0
-0.1
-0.3
-0.1
stress
3.75mM_PTB
-0.6
+0.1
-0.1
+0.3
-0.5
plant
Upstate
-0.0
+0.2
-0.3
-0.1
-0.4
plant
Norland
-0.5
+0.2
-0.1
-0.0
+0.1
plant
Upstate
+0.3
+0.0
-0.4
-0.1
-0.1
carbon source
M9+polygalacturonate
+0.5
+0.1
-0.1
-0.2
-0.4
control
PDB
-0.2
+0.0
+0.2
+0.3
-0.3
control
PDB
-0.2
+0.3
+0.2
+0.3
+0.0
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DZA65_RS06295
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