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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS06025 and DZA65_RS06030 are separated by 255 nucleotides
DZA65_RS06030 and DZA65_RS06035 are separated by 138 nucleotides
DZA65_RS06035 and DZA65_RS06040 are separated by 111 nucleotides
DZA65_RS06040 and DZA65_RS06045 are separated by 123 nucleotides
DZA65_RS06025: DZA65_RS06025 - DNA-binding protein HU-beta, at 1,244,947 to 1,245,219
_RS06025
DZA65_RS06030: DZA65_RS06030 - peptidylprolyl isomerase, at 1,245,475 to 1,247,355
_RS06030
DZA65_RS06035: DZA65_RS06035 - competence protein ComEA, at 1,247,494 to 1,247,868
_RS06035
DZA65_RS06040: DZA65_RS06040 - 7-cyano-7-deazaguanine synthase QueC, at 1,247,980 to 1,248,675
_RS06040
DZA65_RS06045: DZA65_RS06045 - PLP-dependent cysteine synthase family protein, at 1,248,799 to 1,249,851
_RS06045
Group
Condition
DZA65
_RS06025
DZA65
_RS06030
DZA65
_RS06035
DZA65
_RS06040
DZA65
_RS06045
plant
Stem-Upstate
-2.0
-0.7
+0.2
-0.7
-0.1
plant
Stem-Norland
-0.5
-0.9
-0.3
-1.1
+0.2
carbon source
M9+glycerol
-1.8
-0.2
-0.1
-0.3
-0.0
plant
Stem-Atlantic
-1.6
-0.8
+0.6
-0.3
-0.2
plant
Stem-Atlantic
-1.0
-0.8
+0.2
-0.5
-0.1
plant
Stem-Norland
+0.3
-0.8
-0.6
-0.6
-0.4
plant
Stem-Upstate
-0.5
-0.6
+0.2
-0.8
-0.3
plant
Stem-Norland
-0.2
-0.8
-0.8
-0.4
+0.3
plant
Stem-Norland
-0.9
-0.7
+0.4
-0.7
+0.1
plant
Stem-Atlantic
-0.7
-0.9
+0.8
-0.9
-0.0
plant
Stem-Upstate
-1.4
-0.1
-0.2
-0.2
+0.2
plant
Stem-Atlantic
-1.0
-0.3
-0.1
-0.4
+0.0
plant
Norland
-1.1
-0.1
+0.2
-0.5
-0.0
plant
Upstate
-0.3
-0.6
+0.1
-0.5
-0.2
plant
Upstate
-0.4
-0.8
+0.1
-0.3
-0.1
control
PDB
-1.6
+0.2
-0.0
+0.2
-0.2
control
PDB
-0.7
-0.5
-0.1
-0.3
+0.2
plant
Stem-Upstate
-0.4
-0.6
+0.3
-0.6
+0.1
control
PDB
-0.1
-0.6
-0.2
-0.5
+0.2
plant
Stem-Norland
-0.0
-1.0
+0.3
-0.5
+0.1
plant
Atlantic
-0.8
-0.3
+0.6
-0.1
-0.3
plant
Stem-Upstate
-0.1
-0.6
+0.4
-0.4
-0.1
plant
Stem-Norland
+0.5
-1.0
+0.2
-0.3
-0.0
plant
Stem-Atlantic
+0.8
-0.4
-0.2
-0.2
-0.2
plant
Stem-Atlantic
+0.8
-0.8
+0.4
-0.5
-0.2
plant
Stem-Atlantic
+0.8
-0.4
+0.2
-0.7
-0.1
plant
Stem-Upstate
+1.0
-0.6
-0.4
-0.2
+0.0
plant
Upstate
+0.9
-0.4
-0.2
-0.1
-0.2
plant
Norland
+1.0
-0.3
-0.0
-0.4
-0.1
plant
Atlantic
+0.7
-0.4
+0.4
-0.2
-0.2
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