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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS05325 and DZA65_RS05330 overlap by 35 nucleotides
DZA65_RS05330 and DZA65_RS05335 are separated by 39 nucleotides
DZA65_RS05335 and DZA65_RS05340 are separated by 177 nucleotides
DZA65_RS05340 and DZA65_RS05345 are separated by 206 nucleotides
DZA65_RS05325: DZA65_RS05325 - YgdB family protein, at 1,095,886 to 1,096,290
_RS05325
DZA65_RS05330: DZA65_RS05330 - potassium:proton antiporter, at 1,096,256 to 1,096,660
_RS05330
DZA65_RS05335: DZA65_RS05335 - pitrilysin, at 1,096,700 to 1,099,597
_RS05335
DZA65_RS05340: DZA65_RS05340 - amino-acid N-acetyltransferase, at 1,099,775 to 1,101,118
_RS05340
DZA65_RS05345: DZA65_RS05345 - N-acetylmuramoyl-L-alanine amidase, at 1,101,325 to 1,102,563
_RS05345
Group
Condition
DZA65
_RS05325
DZA65
_RS05330
DZA65
_RS05335
DZA65
_RS05340
DZA65
_RS05345
carbon source
M9+polygalacturonate
+0.2
+0.2
+0.0
-3.8
+0.1
carbon source
M9+polygalacturonate
-0.0
+0.3
-0.0
-3.4
+0.2
carbon source
M9+sucrose
-0.1
+0.0
-0.1
-2.6
-0.1
carbon source
M9+polygalacturonate
+0.7
+0.3
-0.1
-3.3
+0.1
carbon source
M9+sucrose
+0.3
-0.0
+0.0
-2.8
-0.0
carbon source
M9+starch
-0.2
-0.1
-0.1
-1.7
-0.0
carbon source
M9+glycerol
-0.3
+0.2
-0.0
-2.3
+0.4
plant
Stem-Upstate
-0.7
-0.2
-0.1
-0.9
-0.1
plant
Stem-Upstate
-0.1
-0.9
-0.1
-0.4
-0.5
carbon source
M9+sucrose
+0.4
+0.0
-0.0
-2.2
+0.0
plant
Stem-Atlantic
+0.2
-0.5
-0.2
-1.0
-0.3
plant
Stem-Upstate
-0.6
-0.2
-0.3
-0.5
-0.1
plant
Stem-Norland
-0.2
+0.4
-0.1
-1.3
-0.3
plant
Stem-Upstate
-0.8
+0.1
-0.1
-0.5
-0.2
carbon source
M9+glycerol
+0.3
+0.0
-0.1
-2.0
+0.4
carbon source
M9+glycerol
+0.3
+0.0
-0.2
-1.8
+0.3
carbon source
M9+glycerol
-0.3
+0.3
-0.0
-1.8
+0.6
plant
Stem-Upstate
+0.0
+0.0
-0.1
-1.2
-0.1
plant
Stem-Atlantic
-0.2
+0.1
-0.1
-0.9
+0.0
plant
Stem-Norland
-0.1
-0.5
-0.2
-0.3
-0.1
plant
Stem-Norland
-0.3
+0.0
-0.2
-0.6
-0.1
plant
Stem-Atlantic
-0.2
+0.2
-0.3
-0.4
-0.5
plant
Stem-Norland
+0.3
-0.0
-0.0
-0.9
-0.3
carbon source
M9+glycerol
+0.2
+0.2
-0.2
-1.2
+0.2
carbon source
M9+starch
+0.2
+0.3
+0.0
-1.2
-0.0
carbon source
M9+starch
+0.6
-0.1
-0.0
-1.2
+0.1
plant
Stem-Norland
-0.4
+0.2
-0.3
-0.1
-0.1
carbon source
M9+glycerol
+0.5
+0.2
+0.0
-1.7
+0.5
plant
Stem-Upstate
+0.4
-0.0
+0.1
-0.8
-0.2
plant
Atlantic
-0.5
+0.3
-0.1
+0.1
-0.1
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