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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS05240 and DZA65_RS05245 are separated by 2 nucleotides
DZA65_RS05245 and DZA65_RS05250 are separated by 158 nucleotides
DZA65_RS05250 and DZA65_RS05255 overlap by 1 nucleotides
DZA65_RS05255 and DZA65_RS05260 are separated by 112 nucleotides
DZA65_RS05240: DZA65_RS05240 - oxidative damage protection protein, at 1,078,835 to 1,079,107
_RS05240
DZA65_RS05245: DZA65_RS05245 - A/G-specific adenine glycosylase, at 1,079,110 to 1,080,195
_RS05245
DZA65_RS05250: DZA65_RS05250 - tRNA (guanosine(46)-N7)-methyltransferase TrmB, at 1,080,354 to 1,081,073
_RS05250
DZA65_RS05255: DZA65_RS05255 - YggL family protein, at 1,081,073 to 1,081,417
_RS05255
DZA65_RS05260: DZA65_RS05260 - DUF2884 domain-containing protein, at 1,081,530 to 1,082,246
_RS05260
Group
Condition
DZA65
_RS05240
DZA65
_RS05245
DZA65
_RS05250
DZA65
_RS05255
DZA65
_RS05260
plant
Stem-Upstate
-1.2
-0.0
-0.2
-0.6
-0.9
plant
Stem-Norland
-1.5
-0.2
-0.0
-0.2
-0.6
plant
Stem-Atlantic
-1.4
-0.3
-0.4
-0.1
-0.3
plant
Stem-Norland
-1.1
-0.7
+0.2
-0.3
-0.1
plant
Stem-Atlantic
-1.0
-0.2
+0.0
-0.3
-0.4
plant
Upstate
-0.9
-0.1
-0.3
-0.4
-0.2
plant
Stem-Upstate
-1.0
+0.2
-0.3
-0.3
-0.3
plant
Stem-Upstate
-0.3
-0.0
+0.0
-0.8
-0.7
plant
Stem-Norland
-1.5
+0.3
-0.2
+0.3
-0.6
plant
Stem-Norland
-1.4
+0.4
-0.0
+0.1
-0.7
plant
Norland
-1.2
-0.0
-0.3
-0.1
+0.1
plant
Upstate
-0.8
-0.4
-0.1
-0.1
+0.1
plant
Stem-Norland
-0.9
+0.1
-0.2
-0.1
-0.1
plant
Atlantic
-0.9
+0.1
-0.0
-0.5
+0.2
plant
Norland
-0.7
+0.2
-0.2
-0.2
-0.3
plant
Stem-Atlantic
-0.7
-0.3
+0.1
+0.3
-0.5
plant
Stem-Atlantic
-0.9
+0.1
-0.1
+0.2
-0.4
plant
Norland
-0.7
+0.2
-0.1
-0.2
-0.1
plant
Stem-Atlantic
-0.4
-0.3
-0.4
-0.1
+0.2
plant
Stem-Upstate
-0.4
+0.1
+0.4
-0.8
-0.3
control
LB
-0.3
-0.2
-0.3
-0.3
+0.2
plant
Stem-Norland
-1.1
+0.6
-0.2
+0.1
-0.2
control
PDB
-0.3
+0.2
+0.2
-0.2
-0.7
control
PDB
-0.5
+0.2
+0.2
-0.3
-0.4
plant
Stem-Upstate
-0.6
+0.0
-0.6
-0.1
+0.4
plant
Stem-Norland
-0.8
+0.1
-0.2
+0.4
-0.1
carbon source
M9+glycerol
+0.4
+0.2
-0.0
-0.5
-0.3
plant
Stem-Upstate
-0.6
+0.1
-0.1
-0.1
+0.4
plant
Stem-Norland
-0.7
+0.3
+0.6
-0.3
-0.1
plant
Stem-Upstate
-0.8
-0.0
+0.1
+0.5
+0.3
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