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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS04815 and DZA65_RS04820 overlap by 4 nucleotides
DZA65_RS04820 and DZA65_RS04825 are separated by 28 nucleotides
DZA65_RS04825 and DZA65_RS04830 overlap by 1 nucleotides
DZA65_RS04830 and DZA65_RS04835 overlap by 11 nucleotides
DZA65_RS04815: DZA65_RS04815 - hypothetical protein, at 998,849 to 999,220
_RS04815
DZA65_RS04820: DZA65_RS04820 - hypothetical protein, at 999,217 to 999,627
_RS04820
DZA65_RS04825: DZA65_RS04825 - replicative DNA helicase, at 999,656 to 1,000,993
_RS04825
DZA65_RS04830: DZA65_RS04830 - ATP synthase, at 1,000,993 to 1,002,750
_RS04830
DZA65_RS04835: DZA65_RS04835 - conjugal transfer protein TraR, at 1,002,740 to 1,002,988
_RS04835
Group
Condition
DZA65
_RS04815
DZA65
_RS04820
DZA65
_RS04825
DZA65
_RS04830
DZA65
_RS04835
plant
Stem-Upstate
-0.5
+0.3
-0.3
+0.2
-1.8
plant
Atlantic
-0.4
-0.2
+0.1
+0.0
-0.7
plant
Stem-Upstate
+0.8
-0.4
-0.1
+0.1
-1.5
plant
Atlantic
-0.2
-0.1
-0.1
-0.0
-0.7
stress
1.88mM_PTB
-0.2
+0.2
+0.0
-0.0
-1.0
plant
Stem-Norland
-0.4
-0.4
-0.1
-0.0
-0.1
carbon source
M9+starch
-0.0
-0.0
+0.1
-0.1
-0.8
plant
Upstate
-0.3
-0.4
+0.0
-0.1
-0.1
carbon source
M9+starch
-0.4
-0.3
+0.0
+0.0
-0.2
plant
Stem-Norland
-0.2
-0.1
+0.0
+0.0
-0.6
plant
Stem-Norland
+0.0
-0.2
+0.1
+0.1
-0.7
plant
Stem-Atlantic
-0.1
-0.1
+0.1
-0.1
-0.5
plant
Stem-Upstate
+0.0
+0.4
-0.1
-0.1
-0.7
plant
Stem-Upstate
-0.3
-0.0
+0.2
+0.1
-0.5
control
PDB
-0.2
-0.3
+0.1
+0.0
-0.2
plant
Norland
+0.2
+0.1
-0.2
-0.0
-0.4
stress
1.88mM_PTB
-0.1
+0.1
+0.1
+0.1
-0.5
carbon source
M9+starch
-0.3
+0.3
+0.1
+0.0
-0.3
plant
Stem-Upstate
+0.6
+0.2
-0.1
-0.1
-0.7
plant
Stem-Atlantic
+0.4
-0.3
-0.1
-0.1
+0.1
control
LB
-0.2
+0.2
-0.1
-0.1
+0.3
plant
Stem-Norland
-0.1
-0.4
+0.2
+0.0
+0.3
plant
Upstate
-0.4
-0.2
+0.1
+0.0
+0.7
stress
3.75mM_PTB
-0.5
+0.1
+0.1
-0.0
+0.6
stress
3.75mM_PTB
-0.3
-0.2
+0.0
+0.1
+0.8
control
LB
-0.4
-0.0
+0.2
+0.1
+0.7
plant
Stem-Atlantic
-0.0
-0.0
+0.0
+0.0
+0.8
stress
1.88mM_PTB
+0.0
+0.2
+0.0
+0.1
+0.6
plant
Stem-Norland
+0.3
+0.2
+0.1
-0.1
+0.6
plant
Stem-Upstate
+0.5
+0.3
+0.1
-0.1
+1.1
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