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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS04540 and DZA65_RS04545 are separated by 0 nucleotides
DZA65_RS04545 and DZA65_RS04550 are separated by 691 nucleotides
DZA65_RS04550 and DZA65_RS04555 are separated by 333 nucleotides
DZA65_RS04555 and DZA65_RS04560 are separated by 98 nucleotides
DZA65_RS04540: DZA65_RS04540 - queuosine precursor transporter, at 945,883 to 946,758
_RS04540
DZA65_RS04545: DZA65_RS04545 - helix-turn-helix transcriptional regulator, at 946,759 to 947,373
_RS04545
DZA65_RS04550: DZA65_RS04550 - rhamnogalacturonate lyase, at 948,065 to 949,795
_RS04550
DZA65_RS04555: DZA65_RS04555 - TIGR00645 family protein, at 950,129 to 950,662
_RS04555
DZA65_RS04560: DZA65_RS04560 - molybdopterin-dependent oxidoreductase, at 950,761 to 953,022
_RS04560
Group
Condition
DZA65
_RS04540
DZA65
_RS04545
DZA65
_RS04550
DZA65
_RS04555
DZA65
_RS04560
plant
Upstate
+0.0
+0.3
+0.0
-0.4
-0.2
carbon source
M9+polygalacturonate
+0.1
+0.3
-0.2
-0.3
-0.2
carbon source
M9+glycerol
-0.2
+0.8
+0.1
-0.6
-0.0
plant
Stem-Norland
-0.2
+0.5
+0.0
-0.2
+0.0
carbon source
M9+starch
+0.3
+0.3
+0.2
-0.4
-0.1
plant
Stem-Upstate
-0.7
+2.1
+0.1
-1.2
-0.1
plant
Stem-Upstate
-0.6
+1.1
-0.2
-0.2
-0.0
plant
Stem-Atlantic
+0.1
+0.1
-0.3
+0.5
-0.1
plant
Stem-Norland
-0.3
+1.0
-0.1
-0.3
-0.1
plant
Stem-Atlantic
-0.3
+0.8
-0.3
+0.1
-0.0
plant
Stem-Norland
-0.3
+1.4
+0.0
-0.6
-0.2
control
LB
+0.2
-0.1
-0.2
+0.5
+0.0
carbon source
M9+glycerol
-0.3
+0.9
+0.1
-0.2
+0.0
plant
Stem-Atlantic
-0.3
+1.1
+0.1
+0.1
-0.3
carbon source
M9+glycerol
-0.2
+0.9
-0.0
+0.2
-0.2
plant
Stem-Norland
-0.6
+1.5
-0.1
-0.1
+0.1
plant
Stem-Atlantic
-0.0
+1.1
-0.1
-0.2
+0.1
plant
Stem-Norland
-0.6
+1.2
-0.1
+0.2
+0.1
plant
Stem-Atlantic
-0.2
+0.8
-0.1
+0.5
-0.0
carbon source
M9+sucrose
+0.3
+0.5
+0.0
+0.1
-0.0
plant
Stem-Upstate
+0.6
+0.8
-0.1
+0.3
-0.0
plant
Stem-Upstate
+0.1
+1.3
+0.2
+0.1
+0.1
plant
Stem-Norland
-0.1
+2.4
-0.0
-0.2
-0.1
plant
Stem-Norland
-0.2
+1.7
+0.1
+0.6
-0.1
plant
Stem-Upstate
-0.3
+3.4
-0.1
-0.9
-0.1
plant
Stem-Atlantic
-0.1
+2.3
+0.1
-0.1
+0.2
plant
Stem-Atlantic
-0.0
+2.0
-0.0
+0.6
-0.0
plant
Stem-Norland
+0.2
+2.3
-0.3
+0.3
+0.1
plant
Stem-Upstate
-0.3
+3.7
-0.2
-0.1
+0.2
plant
Stem-Upstate
-0.4
+3.3
-0.2
+0.4
+0.2
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