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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS04495 and DZA65_RS04500 are separated by 9 nucleotides
DZA65_RS04500 and DZA65_RS04505 overlap by 4 nucleotides
DZA65_RS04505 and DZA65_RS04510 are separated by 58 nucleotides
DZA65_RS04510 and DZA65_RS04515 are separated by 162 nucleotides
DZA65_RS04495: DZA65_RS04495 - ABC transporter ATP-binding protein, at 936,884 to 937,933
_RS04495
DZA65_RS04500: DZA65_RS04500 - carbohydrate ABC transporter permease, at 937,943 to 938,770
_RS04500
DZA65_RS04505: DZA65_RS04505 - sugar ABC transporter permease, at 938,767 to 939,639
_RS04505
DZA65_RS04510: DZA65_RS04510 - ABC transporter substrate-binding protein, at 939,698 to 941,002
_RS04510
DZA65_RS04515: DZA65_RS04515 - multidrug efflux MFS transporter, at 941,165 to 942,358
_RS04515
Group
Condition
DZA65
_RS04495
DZA65
_RS04500
DZA65
_RS04505
DZA65
_RS04510
DZA65
_RS04515
plant
Stem-Norland
-0.1
-0.5
-0.3
-0.8
-0.2
plant
Stem-Upstate
+0.3
-0.6
-0.0
-0.5
-0.8
plant
Stem-Norland
-0.1
-0.2
-0.2
-0.4
-0.4
plant
Stem-Norland
-0.5
+0.4
-0.3
-0.4
-0.4
plant
Stem-Upstate
+0.1
-0.7
-0.1
-0.1
-0.4
plant
Upstate
-0.2
-0.3
-0.1
-0.4
-0.1
plant
Stem-Upstate
+0.2
-0.7
-0.0
-0.3
-0.2
plant
Stem-Norland
+0.1
-0.2
-0.1
-0.4
-0.2
plant
Stem-Upstate
-0.4
-0.1
-0.0
-0.3
-0.0
plant
Stem-Atlantic
-0.0
-0.1
-0.1
-0.3
-0.4
plant
Stem-Upstate
-0.2
+0.1
-0.3
+0.0
-0.3
plant
Norland
-0.0
-0.1
-0.1
-0.2
-0.3
plant
Atlantic
+0.1
-0.3
-0.1
-0.4
+0.1
carbon source
M9+sucrose
-0.3
-0.3
-0.0
-0.0
-0.0
plant
Stem-Norland
+0.3
-0.4
-0.2
+0.0
-0.4
plant
Upstate
-0.1
-0.4
+0.0
-0.2
-0.0
plant
Atlantic
-0.1
-0.2
+0.2
-0.2
-0.4
plant
Upstate
+0.1
-0.3
-0.0
-0.2
-0.2
plant
Stem-Norland
-0.1
+0.0
+0.1
-0.0
-0.6
plant
Stem-Atlantic
+0.3
-0.5
-0.1
-0.2
-0.0
control
LB
-0.3
+0.0
-0.2
+0.2
-0.2
plant
Upstate
+0.2
-0.1
+0.1
-0.3
-0.1
plant
Norland
-0.2
-0.2
+0.1
-0.1
+0.3
plant
Stem-Upstate
+0.1
-0.7
+0.1
+0.5
+0.0
plant
Atlantic
+0.3
-0.2
-0.1
-0.2
+0.1
stress
1.88mM_PTB
+0.2
+0.2
-0.1
-0.2
-0.1
plant
Stem-Norland
+0.6
+0.0
-0.0
-0.0
-0.3
stress
3.75mM_PTB
+0.1
+0.3
-0.1
-0.1
+0.2
control
LB
+0.2
+0.2
+0.0
+0.1
-0.2
control
LB
+0.5
+0.0
-0.1
+0.1
-0.1
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DZA65_RS04505
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