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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS04450 and DZA65_RS04455 are separated by 62 nucleotides
DZA65_RS04455 and DZA65_RS04460 are separated by 2 nucleotides
DZA65_RS04460 and DZA65_RS04465 overlap by 8 nucleotides
DZA65_RS04465 and DZA65_RS04475 are separated by 865 nucleotides
DZA65_RS04450: DZA65_RS04450 - FMN-binding protein, at 928,715 to 929,065
_RS04450
DZA65_RS04455: DZA65_RS04455 - MFS transporter, at 929,128 to 930,507
_RS04455
DZA65_RS04460: DZA65_RS04460 - cytochrome c nitrite reductase subunit NrfD, at 930,510 to 931,466
_RS04460
DZA65_RS04465: DZA65_RS04465 - 4Fe-4S dicluster domain-containing protein, at 931,459 to 932,157
_RS04465
DZA65_RS04475: DZA65_RS04475 - alpha/beta hydrolase, at 933,023 to 933,997
_RS04475
Group
Condition
DZA65
_RS04450
DZA65
_RS04455
DZA65
_RS04460
DZA65
_RS04465
DZA65
_RS04475
plant
Stem-Upstate
N.D.
-0.5
-0.2
-0.6
-0.2
plant
Stem-Norland
N.D.
-0.5
-0.2
-0.1
-0.3
plant
Stem-Atlantic
N.D.
+0.1
-0.3
-0.1
-0.5
plant
Stem-Norland
N.D.
-0.2
-0.3
-0.4
+0.1
plant
Stem-Norland
N.D.
-0.6
-0.2
+0.2
-0.1
plant
Stem-Norland
N.D.
-0.1
-0.2
-0.0
-0.3
plant
Upstate
N.D.
-0.3
-0.1
-0.2
-0.1
plant
Atlantic
N.D.
-0.4
-0.1
+0.1
-0.2
carbon source
M9+polygalacturonate
N.D.
-0.3
-0.2
+0.0
+0.0
plant
Stem-Upstate
N.D.
-0.8
+0.2
+0.2
-0.1
plant
Norland
N.D.
-0.3
+0.0
-0.3
+0.1
plant
Stem-Atlantic
N.D.
-0.1
-0.3
+0.1
-0.1
plant
Stem-Atlantic
N.D.
-0.4
+0.1
-0.1
-0.0
plant
Stem-Norland
N.D.
+0.0
-0.5
+0.0
+0.0
plant
Upstate
N.D.
-0.3
+0.1
-0.1
-0.2
plant
Stem-Norland
N.D.
-0.3
-0.1
+0.1
-0.1
control
LB
N.D.
-0.2
-0.1
+0.1
-0.1
plant
Stem-Atlantic
N.D.
-0.2
-0.4
+0.1
+0.1
plant
Stem-Norland
N.D.
-0.2
-0.2
+0.1
-0.1
plant
Atlantic
N.D.
-0.3
+0.1
-0.0
-0.1
plant
Stem-Atlantic
N.D.
-0.2
-0.2
+0.2
-0.1
plant
Stem-Upstate
N.D.
+0.2
-0.1
-0.2
-0.1
stress
1.88mM_PTB
N.D.
-0.1
-0.0
-0.2
+0.2
plant
Stem-Upstate
N.D.
-0.1
+0.2
-0.2
-0.1
control
LB
N.D.
+0.0
+0.1
-0.3
+0.1
plant
Stem-Atlantic
N.D.
+0.2
-0.0
+0.0
-0.2
plant
Stem-Upstate
N.D.
+0.0
-0.3
+0.4
-0.0
plant
Stem-Upstate
N.D.
-0.1
+0.1
-0.2
+0.4
carbon source
M9+glycerol
N.D.
+0.2
-0.1
+0.2
-0.1
plant
Stem-Upstate
N.D.
+0.4
-0.3
+0.4
+0.4
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