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Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS04265 and DZA65_RS04270 are separated by 57 nucleotides
DZA65_RS04270 and DZA65_RS04275 overlap by 4 nucleotides
DZA65_RS04275 and DZA65_RS04280 are separated by 213 nucleotides
DZA65_RS04280 and DZA65_RS04285 are separated by 500 nucleotides
DZA65_RS04265: DZA65_RS04265 - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 889,239 to 891,518
_RS04265
DZA65_RS04270: DZA65_RS04270 - YaiI/YqxD family protein, at 891,576 to 892,025
_RS04270
DZA65_RS04275: DZA65_RS04275 - oxygen-dependent coproporphyrinogen oxidase, at 892,022 to 892,960
_RS04275
DZA65_RS04280: DZA65_RS04280 - GNAT family acetyltransferase, at 893,174 to 893,599
_RS04280
DZA65_RS04285: DZA65_RS04285 - RpoE-regulated lipoprotein, at 894,100 to 894,708
_RS04285
Group
Condition
DZA65
_RS04265
DZA65
_RS04270
DZA65
_RS04275
DZA65
_RS04280
DZA65
_RS04285
plant
Stem-Upstate
-0.4
-0.2
N.D.
-0.6
-1.2
stress
3.75mM_PTB
-0.2
-0.5
N.D.
-0.4
-0.7
plant
Stem-Upstate
-0.0
-0.5
N.D.
-0.1
-0.8
plant
Stem-Norland
-0.0
-0.5
N.D.
+0.2
-0.7
plant
Stem-Upstate
+0.0
-0.1
N.D.
-0.2
-0.8
carbon source
M9+glycerol
+0.0
-0.2
N.D.
-0.4
-0.5
control
LB
-0.1
-0.4
N.D.
-0.3
-0.1
plant
Stem-Upstate
-0.1
-0.4
N.D.
-0.2
-0.2
plant
Stem-Upstate
-0.1
-0.3
N.D.
-0.1
-0.5
plant
Stem-Norland
-0.1
-0.3
N.D.
+0.1
-0.6
plant
Stem-Norland
-0.1
-0.1
N.D.
-0.1
-0.6
plant
Stem-Atlantic
-0.2
-0.1
N.D.
-0.0
-0.5
stress
3.75mM_PTB
-0.1
-0.2
N.D.
+0.0
-0.4
control
PDB
+0.0
+0.1
N.D.
-0.2
-0.6
carbon source
M9+starch
+0.0
-0.0
N.D.
+0.1
-0.7
stress
3.75mM_PTB
-0.1
-0.4
N.D.
+0.2
-0.3
stress
3.75mM_PTB
-0.2
+0.0
N.D.
+0.0
-0.5
control
LB
+0.0
-0.2
N.D.
+0.1
-0.5
plant
Stem-Atlantic
-0.1
-0.2
N.D.
-0.4
+0.2
plant
Stem-Upstate
-0.0
-0.1
N.D.
+0.1
-0.5
plant
Norland
-0.1
+0.1
N.D.
+0.1
-0.5
plant
Stem-Atlantic
-0.0
-0.3
N.D.
-0.5
+0.4
plant
Stem-Norland
+0.1
+0.2
N.D.
-0.4
+0.1
plant
Stem-Norland
-0.0
-0.4
N.D.
-0.0
+0.4
carbon source
M9+starch
-0.1
+0.1
N.D.
+0.3
-0.4
plant
Stem-Norland
-0.1
+0.6
N.D.
-0.9
+0.5
plant
Stem-Norland
-0.0
-0.2
N.D.
+0.6
-0.2
carbon source
M9+starch
-0.1
+0.2
N.D.
+0.4
-0.1
carbon source
M9+glycerol
+0.1
-0.0
N.D.
+0.5
+0.2
control
LB
+0.1
+0.2
N.D.
+0.2
+0.4
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