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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS04205 and DZA65_RS04215 are separated by 587 nucleotides
DZA65_RS04215 and DZA65_RS04220 are separated by 155 nucleotides
DZA65_RS04220 and DZA65_RS04225 overlap by 8 nucleotides
DZA65_RS04225 and DZA65_RS04230 are separated by 58 nucleotides
DZA65_RS04205: DZA65_RS04205 - zinc ribbon domain-containing protein, at 880,162 to 880,665
_RS04205
DZA65_RS04215: DZA65_RS04215 - SsrA-binding protein SmpB, at 881,253 to 881,735
_RS04215
DZA65_RS04220: DZA65_RS04220 - type II toxin-antitoxin system RatA family toxin, at 881,891 to 882,325
_RS04220
DZA65_RS04225: DZA65_RS04225 - RnfH family protein, at 882,318 to 882,611
_RS04225
DZA65_RS04230: DZA65_RS04230 - outer membrane protein assembly factor BamE, at 882,670 to 883,014
_RS04230
Group
Condition
DZA65
_RS04205
DZA65
_RS04215
DZA65
_RS04220
DZA65
_RS04225
DZA65
_RS04230
plant
Stem-Upstate
+0.1
-1.8
-0.3
-0.6
-1.4
plant
Stem-Upstate
+0.5
-0.5
-1.0
-1.8
-0.9
plant
Stem-Norland
-0.1
-0.3
-0.1
-1.1
-1.9
plant
Upstate
+0.0
-1.1
-0.2
-0.4
-1.6
plant
Stem-Norland
-0.0
-1.9
-0.4
-0.0
-0.8
plant
Stem-Upstate
-0.2
-0.9
+0.1
-0.3
-1.8
plant
Atlantic
+0.2
-0.9
-0.5
-0.0
-1.9
plant
Stem-Atlantic
+0.1
-1.7
-0.2
-0.1
-1.0
plant
Stem-Atlantic
+0.0
-1.1
-0.5
-0.2
-1.0
plant
Stem-Norland
-0.3
-0.7
+0.2
-0.1
-1.8
plant
Stem-Upstate
-0.1
-1.3
-0.2
-0.0
-1.0
stress
1.88mM_PTB
+0.2
-1.3
-1.0
-0.2
-0.2
plant
Stem-Atlantic
+0.2
-1.5
-0.1
-0.3
-0.9
plant
Stem-Norland
-0.1
-0.7
-0.5
-0.7
-0.7
plant
Stem-Atlantic
-0.0
-1.0
-0.7
-0.2
-0.6
plant
Stem-Upstate
-0.0
-0.3
-0.4
+0.3
-2.1
plant
Stem-Norland
+0.2
-0.8
-0.9
-0.3
-0.7
plant
Stem-Norland
-0.2
-1.7
+0.2
+0.1
-0.7
plant
Stem-Upstate
-0.4
-1.1
+0.4
+0.7
-1.8
plant
Upstate
+0.3
-0.9
-0.1
-0.2
-1.4
carbon source
M9+polygalacturonate
-0.1
-0.6
+0.1
-1.1
-0.6
plant
Atlantic
+0.1
-0.7
-0.2
+0.0
-1.4
stress
1.88mM_PTB
-0.0
-1.1
-0.7
-0.4
+0.2
stress
1.88mM_PTB
+0.0
-1.0
-0.9
-0.3
+0.3
plant
Norland
+0.0
-0.6
-0.2
+0.3
-1.2
plant
Norland
+0.4
-0.4
-0.4
+0.0
-1.4
plant
Stem-Norland
+0.1
-0.5
-0.2
+0.6
-1.3
stress
1.88mM_PTB
+0.2
-1.1
-0.7
+0.3
+0.1
plant
Norland
+0.3
-0.6
-0.1
+0.3
-1.1
plant
Upstate
+0.4
-0.4
+0.0
+0.3
-1.4
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