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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS04130 and DZA65_RS04135 overlap by 1 nucleotides
DZA65_RS04135 and DZA65_RS04145 are separated by 132 nucleotides
DZA65_RS04145 and DZA65_RS04155 are separated by 187 nucleotides
DZA65_RS04155 and DZA65_RS04160 overlap by 1 nucleotides
DZA65_RS04130: DZA65_RS04130 - M15 family metallopeptidase, at 869,315 to 869,656
_RS04130
DZA65_RS04135: DZA65_RS04135 - hypothetical protein, at 869,656 to 870,012
_RS04135
DZA65_RS04145: DZA65_RS04145 - hypothetical protein, at 870,145 to 870,402
_RS04145
DZA65_RS04155: DZA65_RS04155 - phage tail tape measure protein, at 870,590 to 872,554
_RS04155
DZA65_RS04160: DZA65_RS04160 - DUF2590 family protein, at 872,554 to 872,883
_RS04160
Group
Condition
DZA65
_RS04130
DZA65
_RS04135
DZA65
_RS04145
DZA65
_RS04155
DZA65
_RS04160
plant
Stem-Upstate
-0.2
+0.6
-1.5
-0.1
-1.1
plant
Stem-Upstate
-0.3
+0.8
-0.8
-0.2
-1.1
control
LB
-0.0
-0.1
-0.1
+0.0
-1.5
plant
Stem-Norland
-0.5
+0.4
-0.4
-0.2
-0.9
plant
Stem-Atlantic
-0.1
-0.2
+0.3
-0.0
-1.4
plant
Atlantic
-0.2
-0.1
-0.2
-0.0
-0.9
plant
Stem-Atlantic
-0.3
+0.5
-0.1
+0.1
-1.2
stress
1.88mM_PTB
+0.0
+0.1
+0.1
-0.1
-1.2
stress
1.88mM_PTB
+0.3
+0.0
-0.3
+0.0
-1.0
stress
3.75mM_PTB
+0.2
-0.4
-0.3
-0.1
-0.4
plant
Stem-Upstate
-0.2
+0.3
-0.5
-0.1
-0.6
plant
Stem-Upstate
-0.1
+0.2
-0.4
+0.0
-0.6
control
LB
-0.0
+0.1
-0.5
+0.1
-0.5
carbon source
M9+starch
+0.1
+0.1
-0.5
+0.0
-0.6
plant
Stem-Upstate
-0.1
+0.2
-1.2
+0.0
+0.4
plant
Stem-Atlantic
-0.3
+0.4
-0.1
-0.3
-0.3
plant
Stem-Atlantic
-0.3
+0.2
+0.5
+0.1
-0.7
plant
Stem-Upstate
+0.0
+0.8
-0.5
-0.0
-0.5
plant
Stem-Norland
-0.3
+1.0
+0.4
+0.1
-1.3
plant
Stem-Atlantic
-0.2
+0.2
+0.4
+0.0
-0.5
control
PDB
-0.4
-0.3
-0.3
+0.1
+0.8
plant
Stem-Upstate
-0.2
-1.1
+0.7
+0.1
+0.4
plant
Stem-Norland
-0.0
+0.8
-0.3
+0.0
-0.2
stress
3.75mM_PTB
+0.3
+0.0
-0.3
-0.1
+0.7
plant
Stem-Norland
-0.1
+0.5
-0.4
+0.1
+0.5
plant
Stem-Norland
+0.6
+0.8
-0.9
-0.3
+0.7
plant
Stem-Norland
-0.5
+0.3
+0.6
-0.0
+0.6
plant
Stem-Norland
-0.1
+0.8
-0.1
+0.1
+0.3
plant
Stem-Norland
-0.1
+0.5
+0.4
+0.2
+0.1
plant
Upstate
-0.1
+0.3
+0.3
+0.2
+0.4
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