Fitness for 5 genes in Dickeya dianthicola ME23

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500 ntDZA65_RS03580 and DZA65_RS03585 are separated by 384 nucleotidesDZA65_RS03585 and DZA65_RS03590 are separated by 101 nucleotidesDZA65_RS03590 and DZA65_RS03595 overlap by 8 nucleotidesDZA65_RS03595 and DZA65_RS03600 are separated by 189 nucleotides DZA65_RS03580: DZA65_RS03580 - tyrosine-type recombinase/integrase, at 751,510 to 752,718 _RS03580 DZA65_RS03585: DZA65_RS03585 - helix-turn-helix transcriptional regulator, at 753,103 to 753,480 _RS03585 DZA65_RS03590: DZA65_RS03590 - heavy metal sensor histidine kinase, at 753,582 to 755,045 _RS03590 DZA65_RS03595: DZA65_RS03595 - copper/silver response regulator transcription factor SilR, at 755,038 to 755,718 _RS03595 DZA65_RS03600: DZA65_RS03600 - efflux transporter outer membrane subunit, at 755,908 to 757,293 _RS03600
Group Condition DZA65_RS03580 DZA65_RS03585 DZA65_RS03590 DZA65_RS03595 DZA65_RS03600
control PDB -0.1 -0.6 -0.1 -0.1 -0.1
control PDB +0.0 -0.5 -0.1 -0.2 -0.1
control PDB -0.1 -0.3 -0.1 -0.0 -0.1
plant Stem-Upstate -0.4 +0.5 -0.3 +0.1 -0.5
plant Norland -0.2 -0.1 +0.0 -0.2 -0.2
plant Upstate -0.1 -0.3 -0.0 -0.1 -0.0
plant Stem-Norland +0.1 -0.7 +0.0 +0.0 +0.0
stress 3.75mM_PTB -0.1 -0.1 -0.1 -0.2 -0.0
plant Stem-Upstate -0.3 +0.2 -0.2 +0.0 -0.2
plant Stem-Upstate -0.2 -0.1 -0.2 -0.1 +0.2
plant Atlantic -0.1 +0.1 -0.0 -0.2 -0.2
plant Norland -0.1 -0.2 +0.0 -0.1 +0.1
plant Stem-Norland -0.1 -0.1 +0.0 +0.1 -0.2
carbon source M9+polygalacturonate +0.1 -0.2 +0.1 -0.1 +0.0
plant Stem-Upstate +0.0 -0.3 +0.2 -0.0 -0.1
plant Stem-Norland -0.2 +0.1 -0.2 +0.1 -0.0
plant Atlantic +0.1 -0.1 -0.2 -0.1 -0.1
plant Stem-Atlantic +0.0 -0.3 -0.0 +0.1 -0.0
carbon source M9+starch -0.1 -0.1 +0.0 -0.2 +0.2
plant Atlantic +0.0 -0.4 -0.1 +0.0 +0.2
plant Stem-Atlantic -0.2 +0.1 -0.1 +0.1 +0.1
plant Stem-Atlantic -0.1 +0.2 +0.1 -0.0 -0.1
control LB -0.1 +0.2 +0.1 -0.1 +0.0
plant Stem-Norland +0.0 +0.4 -0.0 -0.1 +0.1
plant Stem-Norland +0.2 +0.2 +0.0 -0.2 +0.1
stress 1.88mM_PTB +0.2 +0.1 +0.1 +0.1 -0.1
plant Stem-Upstate -0.0 +0.3 +0.2 +0.1 -0.3
stress 1.88mM_PTB +0.1 +0.3 +0.1 +0.0 +0.0
plant Upstate -0.1 +0.3 +0.1 +0.0 +0.3
plant Stem-Norland +0.0 +0.6 +0.0 -0.2 +0.3
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