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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS03500 and DZA65_RS03505 are separated by 9 nucleotides
DZA65_RS03505 and DZA65_RS03510 are separated by 147 nucleotides
DZA65_RS03510 and DZA65_RS03515 are separated by 85 nucleotides
DZA65_RS03515 and DZA65_RS03520 are separated by 556 nucleotides
DZA65_RS03500: DZA65_RS03500 - peptide chain release factor 2, at 739,633 to 740,731
_RS03500
DZA65_RS03505: DZA65_RS03505 - lysine--tRNA ligase, at 740,741 to 742,258
_RS03505
DZA65_RS03510: DZA65_RS03510 - LysE family transporter, at 742,406 to 743,077
_RS03510
DZA65_RS03515: DZA65_RS03515 - tRNA-Gly, at 743,163 to 743,236
_RS03515
DZA65_RS03520: DZA65_RS03520 - DUF3800 domain-containing protein, at 743,793 to 744,563
_RS03520
Group
Condition
DZA65
_RS03500
DZA65
_RS03505
DZA65
_RS03510
DZA65
_RS03515
DZA65
_RS03520
plant
Atlantic
N.D.
N.D.
-0.3
-1.1
-0.1
control
PDB
N.D.
N.D.
-0.5
-0.5
-0.0
carbon source
M9+sucrose
N.D.
N.D.
-0.3
-0.5
+0.1
plant
Stem-Atlantic
N.D.
N.D.
-0.5
-0.2
+0.0
control
LB
N.D.
N.D.
-0.2
-0.4
-0.1
stress
1.88mM_PTB
N.D.
N.D.
-0.2
-0.5
-0.0
plant
Stem-Atlantic
N.D.
N.D.
-0.1
-0.6
+0.1
plant
Upstate
N.D.
N.D.
-0.1
-0.5
+0.0
plant
Upstate
N.D.
N.D.
-0.1
-0.6
+0.1
plant
Norland
N.D.
N.D.
-0.3
-0.4
+0.1
plant
Stem-Atlantic
N.D.
N.D.
+0.1
-0.4
-0.2
control
LB
N.D.
N.D.
-0.2
-0.3
+0.0
plant
Stem-Atlantic
N.D.
N.D.
-0.2
-0.3
+0.0
plant
Stem-Norland
N.D.
N.D.
+0.2
-0.7
-0.0
carbon source
M9+starch
N.D.
N.D.
+0.1
-0.5
+0.0
carbon source
M9+starch
N.D.
N.D.
-0.3
-0.2
+0.1
plant
Stem-Norland
N.D.
N.D.
+0.1
-0.5
+0.1
plant
Stem-Norland
N.D.
N.D.
+0.1
-0.4
+0.1
plant
Stem-Norland
N.D.
N.D.
+0.1
-0.3
+0.2
plant
Stem-Atlantic
N.D.
N.D.
-0.4
+0.4
+0.0
plant
Stem-Norland
N.D.
N.D.
-0.3
+0.3
+0.1
plant
Stem-Upstate
N.D.
N.D.
-0.2
+0.3
+0.1
control
LB
N.D.
N.D.
+0.4
-0.2
+0.1
plant
Stem-Upstate
N.D.
N.D.
-0.1
+0.5
-0.0
carbon source
M9+glycerol
N.D.
N.D.
-0.1
+0.5
+0.0
control
LB
N.D.
N.D.
+0.1
+0.4
+0.0
control
LB
N.D.
N.D.
+0.1
+0.5
+0.0
plant
Norland
N.D.
N.D.
+0.0
+0.7
-0.0
plant
Stem-Upstate
N.D.
N.D.
-0.7
+1.4
+0.1
plant
Stem-Upstate
N.D.
N.D.
-0.4
+1.3
+0.0
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