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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS03465 and DZA65_RS03470 overlap by 20 nucleotides
DZA65_RS03470 and DZA65_RS03475 are separated by 94 nucleotides
DZA65_RS03475 and DZA65_RS03480 are separated by 128 nucleotides
DZA65_RS03480 and DZA65_RS03485 are separated by 262 nucleotides
DZA65_RS03465: DZA65_RS03465 - FAD assembly factor SdhE, at 732,999 to 733,265
_RS03465
DZA65_RS03470: DZA65_RS03470 - membrane protein, at 733,246 to 733,677
_RS03470
DZA65_RS03475: DZA65_RS03475 - flavodoxin FldB, at 733,772 to 734,290
_RS03475
DZA65_RS03480: DZA65_RS03480 - MHS family MFS transporter, at 734,419 to 735,744
_RS03480
DZA65_RS03485: DZA65_RS03485 - site-specific tyrosine recombinase XerD, at 736,007 to 736,906
_RS03485
Group
Condition
DZA65
_RS03465
DZA65
_RS03470
DZA65
_RS03475
DZA65
_RS03480
DZA65
_RS03485
plant
Stem-Upstate
-1.2
-1.6
-0.7
+0.2
N.D.
plant
Stem-Norland
-1.4
-0.8
-0.4
+0.1
N.D.
plant
Stem-Upstate
-1.0
-1.1
-0.3
-0.0
N.D.
plant
Stem-Atlantic
-1.4
-0.9
-0.1
+0.0
N.D.
plant
Stem-Atlantic
-1.0
-1.4
+0.3
-0.1
N.D.
plant
Stem-Atlantic
-0.9
-1.1
-0.1
-0.0
N.D.
plant
Stem-Upstate
-1.6
-0.8
+0.3
-0.1
N.D.
plant
Stem-Norland
-1.0
-0.7
-0.2
-0.2
N.D.
plant
Stem-Norland
-0.9
-0.5
-0.4
-0.1
N.D.
plant
Stem-Norland
-0.8
-0.5
-0.4
-0.0
N.D.
control
LB
-1.3
-0.3
-0.2
+0.0
N.D.
plant
Upstate
-1.0
-0.5
+0.1
-0.4
N.D.
plant
Stem-Upstate
-1.7
-0.2
+0.2
-0.0
N.D.
plant
Stem-Norland
-0.7
-0.6
-0.7
+0.3
N.D.
plant
Stem-Atlantic
-1.5
-0.2
-0.0
+0.1
N.D.
carbon source
M9+sucrose
-0.5
-0.8
-0.2
-0.2
N.D.
control
LB
-1.2
-0.2
-0.2
-0.1
N.D.
control
LB
-1.0
-0.5
-0.1
+0.0
N.D.
plant
Stem-Norland
-1.3
-0.1
+0.1
-0.2
N.D.
plant
Norland
-0.1
-0.6
-0.4
-0.4
N.D.
control
LB
-0.8
-0.4
-0.5
+0.1
N.D.
plant
Atlantic
-0.3
-0.4
-0.2
-0.5
N.D.
plant
Upstate
-0.4
-0.2
-0.8
+0.0
N.D.
plant
Stem-Atlantic
-0.8
-0.7
-0.1
+0.2
N.D.
carbon source
M9+polygalacturonate
-0.7
-0.5
+0.1
-0.1
N.D.
control
PDB
+0.6
+0.2
-0.3
-0.3
N.D.
carbon source
M9+glycerol
-0.3
+0.8
+0.3
-0.1
N.D.
plant
Stem-Upstate
+1.4
-0.3
-0.1
+0.2
N.D.
carbon source
M9+glycerol
+0.6
+0.5
+0.4
-0.1
N.D.
carbon source
M9+glycerol
+0.7
+0.8
+0.3
-0.1
N.D.
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