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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS03245 and DZA65_RS03250 are separated by 108 nucleotides
DZA65_RS03250 and DZA65_RS03255 are separated by 250 nucleotides
DZA65_RS03255 and DZA65_RS03260 are separated by 127 nucleotides
DZA65_RS03260 and DZA65_RS03265 are separated by 108 nucleotides
DZA65_RS03245: DZA65_RS03245 - tRNA pseudouridine(55) synthase TruB, at 688,020 to 688,976
_RS03245
DZA65_RS03250: DZA65_RS03250 - 30S ribosomal protein S15, at 689,085 to 689,354
_RS03250
DZA65_RS03255: DZA65_RS03255 - polyribonucleotide nucleotidyltransferase, at 689,605 to 691,725
_RS03255
DZA65_RS03260: DZA65_RS03260 - lipoprotein NlpI, at 691,853 to 692,737
_RS03260
DZA65_RS03265: DZA65_RS03265 - protein YrbN, at 692,846 to 692,905
_RS03265
Group
Condition
DZA65
_RS03245
DZA65
_RS03250
DZA65
_RS03255
DZA65
_RS03260
DZA65
_RS03265
plant
Stem-Norland
-0.7
N.D.
-0.4
-0.9
-3.4
control
LB
-0.3
N.D.
-1.2
-1.2
-2.0
plant
Stem-Norland
-0.1
N.D.
+0.0
-1.3
-3.2
plant
Stem-Atlantic
-0.8
N.D.
-1.0
-1.0
-1.6
plant
Upstate
-0.2
N.D.
-1.2
-2.0
-0.8
plant
Upstate
-0.2
N.D.
-2.1
-2.1
+0.5
plant
Stem-Norland
-0.4
N.D.
-1.1
-1.4
-0.9
plant
Norland
-0.2
N.D.
-1.3
-1.5
-0.4
control
LB
-0.3
N.D.
-1.5
-1.0
-0.4
control
PDB
+0.3
N.D.
-1.5
-2.0
+0.2
plant
Norland
-0.2
N.D.
-2.0
-1.2
+0.4
plant
Upstate
-0.3
N.D.
-0.3
-2.3
-0.2
plant
Upstate
-0.2
N.D.
-1.0
-1.4
-0.4
control
PDB
+0.4
N.D.
-1.0
-2.4
+0.2
plant
Stem-Upstate
-0.8
N.D.
+0.3
-0.7
-1.4
control
PDB
+0.3
N.D.
-1.1
-1.9
+0.1
plant
Stem-Atlantic
-0.6
N.D.
+0.3
-0.7
-1.5
control
PDB
+0.2
N.D.
-1.5
-0.5
-0.6
plant
Norland
-0.2
N.D.
-1.0
-1.7
+0.5
plant
Stem-Atlantic
-0.6
N.D.
+0.5
-1.3
-1.0
plant
Atlantic
-0.1
N.D.
-0.8
-1.9
+0.6
plant
Atlantic
-0.3
N.D.
-0.4
-2.2
+0.7
plant
Stem-Norland
-0.6
N.D.
+0.8
-1.0
-1.3
plant
Stem-Atlantic
-0.5
N.D.
+0.7
-0.4
-1.8
plant
Stem-Norland
-0.7
N.D.
+0.8
-1.2
-1.0
plant
Stem-Upstate
-0.4
N.D.
+0.5
-0.9
-1.1
plant
Upstate
-0.2
N.D.
-0.7
-2.0
+1.3
plant
Upstate
+0.0
N.D.
-1.3
-2.0
+1.7
plant
Atlantic
-0.1
N.D.
-0.1
-1.9
+0.7
plant
Norland
-0.3
N.D.
-0.3
-1.7
+1.1
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