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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS03050 and DZA65_RS03055 are separated by 70 nucleotides
DZA65_RS03055 and DZA65_RS03060 are separated by 12 nucleotides
DZA65_RS03060 and DZA65_RS03065 are separated by 478 nucleotides
DZA65_RS03065 and DZA65_RS03080 are separated by 888 nucleotides
DZA65_RS03050: DZA65_RS03050 - flavocytochrome c, at 651,142 to 653,919
_RS03050
DZA65_RS03055: DZA65_RS03055 - FAD:protein FMN transferase, at 653,990 to 654,961
_RS03055
DZA65_RS03060: DZA65_RS03060 - TetR/AcrR family transcriptional regulator, at 654,974 to 655,555
_RS03060
DZA65_RS03065: DZA65_RS03065 - SDR family oxidoreductase, at 656,034 to 656,897
_RS03065
DZA65_RS03080: DZA65_RS03080 - site-specific integrase, at 657,786 to 658,238
_RS03080
Group
Condition
DZA65
_RS03050
DZA65
_RS03055
DZA65
_RS03060
DZA65
_RS03065
DZA65
_RS03080
plant
Stem-Upstate
+0.1
-0.2
-0.6
+0.0
-0.4
plant
Stem-Upstate
+0.0
-0.1
-0.5
+0.1
-0.1
carbon source
M9+glycerol
-0.0
-0.0
-0.3
-0.0
-0.1
plant
Stem-Atlantic
-0.0
-0.0
-0.3
+0.1
-0.2
plant
Stem-Upstate
+0.1
+0.2
-0.3
-0.4
+0.1
control
LB
+0.1
-0.2
-0.2
+0.1
-0.2
plant
Stem-Atlantic
-0.0
+0.2
-0.2
-0.2
-0.1
plant
Stem-Atlantic
-0.1
+0.1
+0.2
-0.1
-0.3
stress
3.75mM_PTB
+0.0
-0.0
-0.1
+0.2
-0.2
plant
Upstate
-0.2
-0.1
+0.3
-0.1
-0.0
plant
Stem-Norland
+0.1
-0.1
-0.2
+0.2
-0.1
stress
1.88mM_PTB
-0.0
+0.1
-0.3
+0.1
+0.0
carbon source
M9+polygalacturonate
+0.0
-0.1
-0.1
-0.2
+0.2
stress
1.88mM_PTB
+0.0
+0.1
-0.0
+0.2
-0.3
plant
Norland
-0.0
-0.1
+0.3
+0.1
-0.1
plant
Stem-Norland
-0.1
+0.2
+0.3
-0.5
+0.1
plant
Stem-Upstate
-0.1
-0.3
+0.3
+0.1
+0.1
plant
Stem-Upstate
+0.1
-0.2
+0.2
+0.2
-0.1
plant
Stem-Norland
-0.0
+0.1
+0.2
+0.1
-0.1
plant
Stem-Norland
+0.1
+0.1
-0.1
+0.4
-0.2
plant
Upstate
+0.0
-0.1
+0.1
-0.1
+0.4
plant
Stem-Norland
+0.1
+0.1
+0.1
-0.2
+0.1
plant
Upstate
+0.1
-0.2
+0.3
+0.2
+0.1
plant
Upstate
-0.0
+0.1
-0.1
+0.3
+0.1
control
LB
+0.1
+0.2
-0.1
+0.2
-0.0
carbon source
M9+starch
-0.0
+0.2
+0.2
+0.1
+0.1
plant
Atlantic
-0.0
-0.0
+0.2
+0.2
+0.3
plant
Stem-Upstate
+0.1
+0.2
+0.1
+0.1
+0.1
plant
Norland
-0.1
+0.1
+0.3
+0.1
+0.2
control
PDB
-0.0
+0.2
+0.2
+0.2
+0.1
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