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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS02450 and DZA65_RS02455 overlap by 4 nucleotides
DZA65_RS02455 and DZA65_RS02460 are separated by 39 nucleotides
DZA65_RS02460 and DZA65_RS02465 are separated by 234 nucleotides
DZA65_RS02465 and DZA65_RS02475 are separated by 338 nucleotides
DZA65_RS02450: DZA65_RS02450 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 528,311 to 529,489
_RS02450
DZA65_RS02455: DZA65_RS02455 - Xaa-Pro aminopeptidase, at 529,486 to 530,814
_RS02455
DZA65_RS02460: DZA65_RS02460 - YecA family protein, at 530,854 to 531,438
_RS02460
DZA65_RS02465: DZA65_RS02465 - cell division protein ZapA, at 531,673 to 532,002
_RS02465
DZA65_RS02475: DZA65_RS02475 - 5-formyltetrahydrofolate cyclo-ligase, at 532,341 to 532,955
_RS02475
Group
Condition
DZA65
_RS02450
DZA65
_RS02455
DZA65
_RS02460
DZA65
_RS02465
DZA65
_RS02475
plant
Stem-Upstate
N.D.
-0.8
-0.9
-2.2
+0.2
carbon source
M9+polygalacturonate
N.D.
-0.7
-0.1
+0.0
-2.7
plant
Stem-Upstate
N.D.
-0.4
-0.4
-1.3
-1.1
carbon source
M9+polygalacturonate
N.D.
-0.5
+0.5
+0.2
-3.2
plant
Stem-Norland
N.D.
-0.2
-0.7
-0.4
-0.8
carbon source
M9+polygalacturonate
N.D.
-0.2
+0.1
+0.5
-2.4
carbon source
M9+glycerol
N.D.
-0.3
-0.0
-0.1
-1.0
carbon source
M9+sucrose
N.D.
-0.3
+0.1
+0.7
-2.1
plant
Stem-Upstate
N.D.
-0.3
-0.1
-0.7
-0.4
carbon source
M9+sucrose
N.D.
-0.1
+0.4
+0.1
-1.6
carbon source
M9+sucrose
N.D.
-0.2
+0.0
+0.4
-1.3
carbon source
M9+glycerol
N.D.
-0.1
+0.1
-0.4
-0.5
carbon source
M9+glycerol
N.D.
-0.6
+0.1
+0.4
-0.9
control
LB
N.D.
+0.1
-0.3
-0.6
+0.1
plant
Atlantic
N.D.
-0.1
-0.5
-0.3
+0.1
plant
Norland
N.D.
-0.2
+0.0
-0.8
+0.1
plant
Stem-Atlantic
N.D.
-0.2
-0.6
+0.3
-0.1
plant
Upstate
N.D.
-0.4
-0.1
-0.3
+0.4
control
LB
N.D.
-0.6
+0.1
-0.4
+0.7
plant
Norland
N.D.
+0.1
+0.1
-0.8
+0.4
plant
Norland
N.D.
-0.4
+0.2
-0.1
+0.3
control
LB
N.D.
-0.1
-0.3
+0.1
+0.5
stress
3.75mM_PTB
N.D.
+0.3
-0.2
+0.6
-0.3
plant
Stem-Norland
N.D.
-0.1
+0.1
+0.7
-0.3
plant
Atlantic
N.D.
-0.4
-0.0
+0.5
+0.3
stress
3.75mM_PTB
N.D.
+0.2
-0.2
+0.7
-0.2
carbon source
M9+starch
N.D.
-0.1
+0.1
+0.6
-0.2
plant
Stem-Norland
N.D.
-0.2
-0.1
+0.4
+0.4
plant
Stem-Norland
N.D.
-0.0
-0.3
+1.0
-0.0
plant
Stem-Norland
N.D.
+0.2
-0.0
+0.4
+0.5
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