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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS02430 and DZA65_RS02435 are separated by 218 nucleotides
DZA65_RS02435 and DZA65_RS02445 are separated by 769 nucleotides
DZA65_RS02445 and DZA65_RS02450 are separated by 21 nucleotides
DZA65_RS02450 and DZA65_RS02455 overlap by 4 nucleotides
DZA65_RS02430: DZA65_RS02430 - ABC transporter substrate-binding protein, at 523,919 to 525,547
_RS02430
DZA65_RS02435: DZA65_RS02435 - DUF1440 domain-containing protein, at 525,766 to 526,308
_RS02435
DZA65_RS02445: DZA65_RS02445 - FAD-dependent 2-octaprenylphenol hydroxylase, at 527,078 to 528,289
_RS02445
DZA65_RS02450: DZA65_RS02450 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 528,311 to 529,489
_RS02450
DZA65_RS02455: DZA65_RS02455 - Xaa-Pro aminopeptidase, at 529,486 to 530,814
_RS02455
Group
Condition
DZA65
_RS02430
DZA65
_RS02435
DZA65
_RS02445
DZA65
_RS02450
DZA65
_RS02455
plant
Stem-Upstate
-0.0
-0.8
N.D.
N.D.
-0.8
plant
Stem-Upstate
+0.0
-0.5
N.D.
N.D.
-0.4
carbon source
M9+glycerol
-0.2
-0.1
N.D.
N.D.
-0.6
plant
Upstate
-0.1
-0.2
N.D.
N.D.
-0.4
carbon source
M9+polygalacturonate
-0.1
+0.3
N.D.
N.D.
-0.7
plant
Stem-Upstate
+0.0
-0.2
N.D.
N.D.
-0.4
control
LB
-0.0
+0.2
N.D.
N.D.
-0.6
carbon source
M9+sucrose
-0.2
+0.1
N.D.
N.D.
-0.3
carbon source
M9+glycerol
-0.1
-0.0
N.D.
N.D.
-0.3
plant
Stem-Atlantic
-0.1
-0.4
N.D.
N.D.
+0.1
plant
Norland
-0.0
+0.1
N.D.
N.D.
-0.4
plant
Upstate
+0.1
-0.1
N.D.
N.D.
-0.2
carbon source
M9+polygalacturonate
-0.1
+0.3
N.D.
N.D.
-0.5
plant
Stem-Norland
+0.2
-0.2
N.D.
N.D.
-0.2
stress
3.75mM_PTB
-0.1
-0.3
N.D.
N.D.
+0.2
plant
Atlantic
+0.1
+0.2
N.D.
N.D.
-0.4
plant
Atlantic
-0.0
+0.2
N.D.
N.D.
-0.2
plant
Norland
-0.1
+0.2
N.D.
N.D.
-0.1
control
LB
-0.1
+0.2
N.D.
N.D.
-0.2
plant
Stem-Norland
+0.0
-0.5
N.D.
N.D.
+0.4
plant
Stem-Atlantic
-0.0
-0.4
N.D.
N.D.
+0.3
carbon source
M9+polygalacturonate
-0.2
+0.4
N.D.
N.D.
-0.2
stress
3.75mM_PTB
-0.2
-0.1
N.D.
N.D.
+0.3
plant
Stem-Atlantic
-0.0
+0.3
N.D.
N.D.
-0.2
plant
Stem-Norland
+0.1
+0.2
N.D.
N.D.
-0.2
plant
Stem-Norland
-0.1
+0.3
N.D.
N.D.
-0.1
control
PDB
+0.1
-0.1
N.D.
N.D.
+0.2
plant
Stem-Norland
+0.2
+0.2
N.D.
N.D.
-0.2
plant
Norland
-0.0
+0.3
N.D.
N.D.
+0.1
plant
Stem-Norland
-0.0
+0.3
N.D.
N.D.
+0.2
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