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Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS02120 and DZA65_RS02130 are separated by 1041 nucleotides
DZA65_RS02130 and DZA65_RS02135 overlap by 17 nucleotides
DZA65_RS02135 and DZA65_RS02140 are separated by 286 nucleotides
DZA65_RS02140 and DZA65_RS02145 are separated by 1120 nucleotides
DZA65_RS02120: DZA65_RS02120 - site-specific integrase, at 466,824 to 467,705
_RS02120
DZA65_RS02130: DZA65_RS02130 - type II toxin-antitoxin system RelE/ParE family toxin, at 468,747 to 469,098
_RS02130
DZA65_RS02135: DZA65_RS02135 - DNA-binding transcriptional regulator, at 469,082 to 469,405
_RS02135
DZA65_RS02140: DZA65_RS02140 - RNA-directed DNA polymerase, at 469,692 to 471,419
_RS02140
DZA65_RS02145: DZA65_RS02145 - type II toxin-antitoxin system RelE/ParE family toxin, at 472,540 to 472,860
_RS02145
Group
Condition
DZA65
_RS02120
DZA65
_RS02130
DZA65
_RS02135
DZA65
_RS02140
DZA65
_RS02145
plant
Stem-Norland
+0.1
-0.0
-0.9
-0.4
-0.0
control
PDB
+0.2
-0.1
-0.4
-0.4
-0.4
plant
Stem-Upstate
-0.1
-0.2
-0.6
+0.0
-0.1
plant
Stem-Norland
+0.0
+0.3
-0.7
-0.3
-0.0
control
PDB
+0.3
-0.1
-0.1
-0.5
-0.1
control
PDB
+0.2
-0.0
-0.0
-0.2
-0.5
plant
Stem-Atlantic
+0.3
-0.1
-0.5
-0.2
-0.0
plant
Stem-Atlantic
-0.1
+0.2
-0.4
-0.1
-0.1
stress
1.88mM_PTB
-0.1
+0.2
-0.6
-0.1
+0.1
plant
Stem-Upstate
+0.2
-0.0
-0.7
+0.3
-0.3
plant
Stem-Norland
+0.1
+0.2
-0.2
-0.3
-0.2
plant
Stem-Upstate
-0.1
+0.1
-0.0
+0.4
-0.8
carbon source
M9+glycerol
+0.5
-0.1
-0.7
-0.1
+0.1
control
PDB
+0.2
+0.0
-0.5
-0.1
+0.1
carbon source
M9+starch
+0.1
-0.0
+0.2
-0.2
-0.3
carbon source
M9+glycerol
+0.5
-0.1
-0.4
-0.0
-0.0
plant
Stem-Norland
+0.3
+0.1
-0.7
-0.0
+0.3
carbon source
M9+glycerol
+0.2
+0.1
-0.5
+0.2
+0.1
plant
Upstate
+0.1
+0.2
-0.1
-0.2
+0.3
carbon source
M9+glycerol
+0.6
+0.0
-0.3
+0.0
+0.0
plant
Stem-Atlantic
+0.0
+0.1
+0.3
-0.5
+0.4
plant
Norland
+0.1
+0.1
-0.2
+0.2
+0.3
carbon source
M9+sucrose
+0.2
+0.1
+0.3
-0.1
-0.2
carbon source
M9+polygalacturonate
-0.1
+0.2
+0.2
+0.4
-0.2
plant
Norland
-0.0
+0.3
+0.2
-0.2
+0.4
plant
Upstate
+0.1
-0.1
+0.2
+0.1
+0.4
carbon source
M9+polygalacturonate
-0.1
+0.2
+0.4
+0.1
+0.2
plant
Atlantic
+0.1
+0.0
+0.5
+0.1
+0.2
plant
Stem-Upstate
+0.0
-0.0
+0.6
+0.1
+0.3
plant
Stem-Upstate
-0.1
-0.4
+0.7
+0.6
+0.3
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