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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS02100 and DZA65_RS02105 are separated by 222 nucleotides
DZA65_RS02105 and DZA65_RS02110 overlap by 8 nucleotides
DZA65_RS02110 and DZA65_RS02115 overlap by 4 nucleotides
DZA65_RS02115 and DZA65_RS02120 overlap by 1 nucleotides
DZA65_RS02100: DZA65_RS02100 - transcriptional regulator, at 463,561 to 463,827
_RS02100
DZA65_RS02105: DZA65_RS02105 - AAA family ATPase, at 464,050 to 466,095
_RS02105
DZA65_RS02110: DZA65_RS02110 - ash family protein, at 466,088 to 466,624
_RS02110
DZA65_RS02115: DZA65_RS02115 - AlpA family transcriptional regulator, at 466,621 to 466,824
_RS02115
DZA65_RS02120: DZA65_RS02120 - site-specific integrase, at 466,824 to 467,705
_RS02120
Group
Condition
DZA65
_RS02100
DZA65
_RS02105
DZA65
_RS02110
DZA65
_RS02115
DZA65
_RS02120
plant
Stem-Upstate
-2.8
-0.0
-0.0
+0.2
-0.1
plant
Stem-Upstate
-2.6
+0.3
-0.1
+0.4
+0.1
plant
Stem-Upstate
-1.9
+0.2
+0.1
-0.2
-0.1
plant
Stem-Norland
-1.7
-0.2
+0.0
+0.5
+0.1
plant
Stem-Norland
-1.7
-0.0
+0.0
+0.4
+0.1
plant
Stem-Norland
-0.9
+0.1
+0.0
-0.4
+0.0
control
LB
-0.4
-0.0
-0.2
-0.2
-0.2
control
PDB
-0.6
-0.2
-0.1
-0.0
+0.2
control
PDB
-0.5
+0.0
-0.1
-0.2
+0.2
plant
Norland
-0.4
-0.1
+0.2
+0.0
+0.2
carbon source
M9+starch
-0.5
-0.0
+0.0
+0.2
+0.2
plant
Stem-Norland
-0.8
+0.1
+0.0
+0.4
+0.1
carbon source
M9+sucrose
-0.6
+0.1
-0.0
+0.3
+0.2
plant
Upstate
-0.3
-0.1
-0.0
+0.5
+0.1
carbon source
M9+glycerol
-0.3
-0.1
+0.1
-0.0
+0.5
plant
Stem-Atlantic
-0.5
+0.2
+0.1
+0.4
+0.1
plant
Stem-Norland
-0.4
+0.1
+0.1
+0.2
+0.3
plant
Stem-Norland
-0.7
+0.3
+0.1
+0.4
+0.1
carbon source
M9+glycerol
-0.3
+0.1
+0.1
+0.3
+0.6
plant
Stem-Atlantic
+0.3
+0.0
+0.0
+0.4
-0.1
control
LB
+0.6
-0.1
+0.1
+0.3
-0.1
plant
Upstate
+0.5
-0.1
-0.0
+0.2
+0.2
control
PDB
+0.3
-0.0
-0.1
+0.2
+0.3
plant
Stem-Atlantic
+0.2
+0.2
+0.1
+0.5
-0.0
carbon source
M9+sucrose
+0.6
+0.2
-0.1
-0.0
+0.2
plant
Stem-Atlantic
+0.5
+0.1
+0.1
+0.4
+0.0
plant
Stem-Atlantic
+0.4
+0.0
+0.3
+0.3
+0.3
plant
Stem-Upstate
+1.0
-0.0
-0.2
+0.6
+0.2
plant
Stem-Upstate
+1.2
+0.0
-0.0
+0.4
+0.0
plant
Stem-Upstate
+1.7
+0.0
+0.1
+0.4
-0.1
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