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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS01980 and DZA65_RS01985 are separated by 119 nucleotides
DZA65_RS01985 and DZA65_RS01990 are separated by 162 nucleotides
DZA65_RS01990 and DZA65_RS01995 are separated by 210 nucleotides
DZA65_RS01995 and DZA65_RS02000 are separated by 119 nucleotides
DZA65_RS01980: DZA65_RS01980 - 6-phospho-beta-glucosidase, at 435,331 to 436,767
_RS01980
DZA65_RS01985: DZA65_RS01985 - ornithine carbamoyltransferase, at 436,887 to 437,903
_RS01985
DZA65_RS01990: DZA65_RS01990 - ribonuclease E inhibitor RraB, at 438,066 to 438,494
_RS01990
DZA65_RS01995: DZA65_RS01995 - DUF29 domain-containing protein, at 438,705 to 439,136
_RS01995
DZA65_RS02000: DZA65_RS02000 - hypothetical protein, at 439,256 to 439,990
_RS02000
Group
Condition
DZA65
_RS01980
DZA65
_RS01985
DZA65
_RS01990
DZA65
_RS01995
DZA65
_RS02000
plant
Stem-Upstate
-0.2
-2.4
-0.2
-0.3
-0.2
plant
Stem-Upstate
-0.0
-2.2
+0.2
-0.2
-0.5
plant
Stem-Norland
-0.0
-1.8
-0.8
+0.2
-0.1
plant
Stem-Norland
-0.3
-1.8
-0.4
+0.0
-0.1
plant
Stem-Upstate
-0.0
-1.6
-1.1
-0.5
+0.8
carbon source
M9+glycerol
-0.1
-2.3
+0.1
-0.1
+0.2
carbon source
M9+glycerol
-0.1
-2.1
+0.1
-0.0
+0.0
carbon source
M9+glycerol
-0.1
-2.3
+0.2
+0.1
-0.0
plant
Stem-Atlantic
-0.2
-1.3
-0.5
+0.1
-0.0
plant
Stem-Upstate
+0.1
-1.5
+0.4
-0.6
-0.5
plant
Stem-Atlantic
-0.1
-1.1
-0.8
+0.0
+0.1
plant
Stem-Atlantic
-0.1
-1.6
-0.6
+0.2
+0.1
carbon source
M9+glycerol
-0.0
-2.3
+0.2
+0.1
+0.2
plant
Stem-Norland
+0.1
-1.3
-0.5
-0.1
-0.1
plant
Stem-Norland
+0.2
-1.6
-0.6
+0.2
-0.1
carbon source
M9+polygalacturonate
+0.1
-2.4
-0.0
+0.3
+0.3
carbon source
M9+sucrose
+0.0
-2.3
-0.1
+0.4
+0.0
carbon source
M9+polygalacturonate
-0.1
-2.4
-0.1
+0.5
+0.3
plant
Stem-Atlantic
+0.0
-1.2
+0.1
-0.1
-0.6
carbon source
M9+sucrose
-0.0
-1.8
-0.2
+0.4
-0.0
plant
Stem-Norland
+0.1
-1.4
-0.4
+0.1
-0.2
carbon source
M9+glycerol
-0.0
-2.0
-0.1
+0.3
+0.1
carbon source
M9+glycerol
+0.0
-1.9
+0.2
-0.1
+0.2
plant
Stem-Norland
+0.0
-1.7
-0.5
+0.3
+0.4
carbon source
M9+starch
-0.0
-1.5
-0.3
+0.3
+0.1
carbon source
M9+polygalacturonate
-0.1
-2.1
+0.1
+0.4
+0.3
carbon source
M9+sucrose
+0.0
-1.9
-0.2
+0.4
+0.4
carbon source
M9+starch
-0.0
-1.6
+0.0
+0.2
+0.3
plant
Stem-Upstate
+0.2
-1.7
-0.1
+0.0
+0.5
carbon source
M9+starch
-0.0
-1.6
+0.1
+0.5
+0.1
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