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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS01935 and DZA65_RS01940 overlap by 7 nucleotides
DZA65_RS01940 and DZA65_RS01945 are separated by 461 nucleotides
DZA65_RS01945 and DZA65_RS01950 are separated by 77 nucleotides
DZA65_RS01950 and DZA65_RS01955 are separated by 444 nucleotides
DZA65_RS01935: DZA65_RS01935 - alpha-E domain-containing protein, at 424,251 to 425,180
_RS01935
DZA65_RS01940: DZA65_RS01940 - circularly permuted type 2 ATP-grasp protein, at 425,174 to 426,613
_RS01940
DZA65_RS01945: DZA65_RS01945 - FAD-dependent oxidoreductase, at 427,075 to 428,766
_RS01945
DZA65_RS01950: DZA65_RS01950 - indoleacetamide hydrolase, at 428,844 to 430,187
_RS01950
DZA65_RS01955: DZA65_RS01955 - isopentenyl transferase, at 430,632 to 431,351
_RS01955
Group
Condition
DZA65
_RS01935
DZA65
_RS01940
DZA65
_RS01945
DZA65
_RS01950
DZA65
_RS01955
plant
Stem-Upstate
-0.1
-0.2
-0.0
-0.1
-0.5
plant
Stem-Norland
-0.2
+0.0
+0.1
+0.2
-0.9
stress
3.75mM_PTB
-0.1
+0.0
-0.1
+0.0
-0.6
control
PDB
-0.2
+0.0
-0.0
-0.1
-0.4
control
LB
-0.2
-0.0
-0.1
-0.0
-0.4
control
LB
-0.5
-0.1
-0.1
+0.0
-0.0
plant
Stem-Norland
+0.1
-0.2
-0.1
-0.0
-0.3
plant
Stem-Upstate
-0.3
-0.0
+0.2
+0.0
-0.5
control
PDB
-0.1
+0.1
-0.1
-0.3
-0.1
stress
3.75mM_PTB
+0.1
+0.1
-0.1
-0.0
-0.5
plant
Stem-Atlantic
+0.2
+0.0
+0.1
-0.2
-0.6
plant
Stem-Atlantic
+0.1
-0.1
-0.0
+0.1
-0.4
plant
Stem-Upstate
+0.2
+0.1
+0.0
-0.0
-0.7
plant
Upstate
-0.2
+0.1
+0.0
-0.2
+0.1
plant
Stem-Upstate
+0.0
+0.0
+0.2
+0.3
-0.7
plant
Stem-Atlantic
+0.1
+0.1
-0.1
+0.1
-0.3
plant
Atlantic
-0.2
+0.0
-0.0
-0.2
+0.5
plant
Atlantic
-0.1
+0.0
+0.2
-0.2
+0.2
plant
Atlantic
-0.1
-0.0
+0.1
-0.1
+0.3
stress
1.88mM_PTB
+0.1
+0.2
+0.0
+0.2
-0.1
plant
Atlantic
+0.2
-0.0
-0.0
-0.1
+0.4
plant
Upstate
-0.1
+0.0
+0.1
-0.1
+0.6
carbon source
M9+glycerol
-0.1
+0.0
-0.0
+0.0
+0.6
plant
Norland
+0.2
+0.1
-0.0
-0.0
+0.4
plant
Stem-Upstate
+0.1
+0.0
+0.0
+0.3
+0.4
plant
Norland
+0.2
+0.0
+0.1
-0.0
+0.5
plant
Norland
+0.1
+0.1
-0.0
+0.0
+0.6
plant
Upstate
+0.1
+0.1
+0.0
-0.0
+0.6
plant
Stem-Upstate
+0.3
+0.2
+0.3
+0.3
-0.1
plant
Stem-Upstate
+0.2
-0.0
+0.1
+0.3
+0.3
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