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Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS01880 and DZA65_RS01885 are separated by 387 nucleotides
DZA65_RS01885 and DZA65_RS01890 are separated by 75 nucleotides
DZA65_RS01890 and DZA65_RS01895 are separated by 10 nucleotides
DZA65_RS01895 and DZA65_RS01900 are separated by 27 nucleotides
DZA65_RS01880: DZA65_RS01880 - anaerobic ribonucleoside-triphosphate reductase, at 412,393 to 414,531
_RS01880
DZA65_RS01885: DZA65_RS01885 - homocysteine S-methyltransferase family protein, at 414,919 to 415,827
_RS01885
DZA65_RS01890: DZA65_RS01890 - ABC transporter substrate-binding protein, at 415,903 to 417,444
_RS01890
DZA65_RS01895: DZA65_RS01895 - ABC transporter permease, at 417,455 to 418,459
_RS01895
DZA65_RS01900: DZA65_RS01900 - ABC transporter permease, at 418,487 to 419,308
_RS01900
Group
Condition
DZA65
_RS01880
DZA65
_RS01885
DZA65
_RS01890
DZA65
_RS01895
DZA65
_RS01900
plant
Stem-Norland
-0.1
-0.1
-0.3
-0.1
-1.3
plant
Stem-Norland
-0.3
-0.2
+0.1
-0.5
-0.9
plant
Stem-Norland
-0.4
-0.3
+0.2
-0.4
-0.3
plant
Stem-Upstate
+0.1
-0.5
-0.5
-0.0
-0.3
plant
Norland
-0.3
-0.2
+0.0
-0.2
-0.5
plant
Upstate
-0.5
-0.3
+0.0
-0.1
+0.0
plant
Upstate
-0.3
-0.0
+0.1
-0.2
-0.4
plant
Upstate
-0.4
-0.2
+0.0
-0.3
+0.0
plant
Stem-Atlantic
+0.0
-0.3
-0.2
-0.0
-0.2
plant
Stem-Norland
-0.1
-0.3
+0.2
-0.3
-0.1
plant
Stem-Upstate
-0.0
-0.3
-0.2
-0.2
+0.2
plant
Stem-Atlantic
-0.1
-0.0
-0.2
+0.1
-0.3
carbon source
M9+polygalacturonate
+0.0
-0.1
-0.1
+0.1
-0.5
control
PDB
+0.0
+0.1
-0.0
-0.2
-0.4
plant
Stem-Norland
-0.2
-0.1
-0.1
-0.4
+0.5
plant
Atlantic
-0.2
-0.1
-0.1
+0.0
+0.3
plant
Norland
-0.2
+0.1
-0.1
-0.2
+0.3
control
LB
+0.0
+0.2
+0.1
+0.0
-0.4
stress
1.88mM_PTB
-0.0
+0.2
+0.2
+0.1
-0.4
plant
Atlantic
-0.1
+0.1
-0.1
-0.1
+0.4
plant
Stem-Norland
-0.1
-0.2
+0.0
-0.2
+0.7
plant
Stem-Upstate
-0.0
+0.0
-0.3
+0.0
+0.6
plant
Stem-Atlantic
+0.1
+0.2
-0.2
-0.2
+0.5
plant
Norland
-0.2
+0.3
+0.1
+0.1
+0.1
control
LB
-0.0
-0.0
-0.0
-0.1
+0.6
plant
Upstate
-0.2
-0.1
+0.1
+0.1
+0.5
plant
Stem-Upstate
+0.1
-0.3
-0.1
-0.1
+0.8
control
LB
+0.0
+0.2
+0.0
-0.1
+0.4
plant
Stem-Upstate
-0.2
-0.0
-0.0
+0.2
+1.1
plant
Stem-Upstate
-0.3
-0.0
-0.3
+0.2
+1.7
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