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Gene
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Nearby
Cofit
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS01730 and DZA65_RS01735 are separated by 186 nucleotides
DZA65_RS01735 and DZA65_RS01740 are separated by 12 nucleotides
DZA65_RS01740 and DZA65_RS01745 are separated by 64 nucleotides
DZA65_RS01745 and DZA65_RS01750 are separated by 276 nucleotides
DZA65_RS01730: DZA65_RS01730 - esterase YqiA, at 375,392 to 375,973
_RS01730
DZA65_RS01735: DZA65_RS01735 - DNA topoisomerase IV subunit B, at 376,160 to 378,055
_RS01735
DZA65_RS01740: DZA65_RS01740 - LysR family transcriptional regulator, at 378,068 to 378,963
_RS01740
DZA65_RS01745: DZA65_RS01745 - NAD(P)H-dependent oxidoreductase, at 379,028 to 379,609
_RS01745
DZA65_RS01750: DZA65_RS01750 - DNA topoisomerase IV subunit A, at 379,886 to 382,162
_RS01750
Group
Condition
DZA65
_RS01730
DZA65
_RS01735
DZA65
_RS01740
DZA65
_RS01745
DZA65
_RS01750
stress
3.75mM_PTB
-0.2
N.D.
-0.1
-0.2
N.D.
control
PDB
+0.2
N.D.
+0.1
-0.7
N.D.
control
PDB
+0.3
N.D.
+0.0
-0.7
N.D.
control
PDB
+0.3
N.D.
+0.1
-0.7
N.D.
stress
1.88mM_PTB
+0.1
N.D.
-0.0
-0.3
N.D.
plant
Upstate
+0.1
N.D.
+0.0
-0.4
N.D.
plant
Upstate
+0.2
N.D.
-0.2
-0.0
N.D.
control
LB
-0.1
N.D.
+0.3
-0.1
N.D.
plant
Norland
+0.1
N.D.
-0.2
+0.2
N.D.
carbon source
M9+starch
-0.0
N.D.
-0.2
+0.3
N.D.
carbon source
M9+sucrose
-0.2
N.D.
+0.2
+0.1
N.D.
plant
Stem-Norland
-0.1
N.D.
+0.4
-0.2
N.D.
carbon source
M9+glycerol
-0.0
N.D.
+0.4
-0.2
N.D.
carbon source
M9+starch
+0.2
N.D.
+0.1
-0.2
N.D.
plant
Stem-Atlantic
+0.2
N.D.
+0.2
-0.3
N.D.
plant
Stem-Norland
+0.5
N.D.
-0.5
+0.2
N.D.
plant
Stem-Upstate
+0.2
N.D.
+0.2
-0.1
N.D.
carbon source
M9+polygalacturonate
+0.3
N.D.
+0.1
-0.1
N.D.
carbon source
M9+glycerol
+0.3
N.D.
+0.2
-0.1
N.D.
carbon source
M9+glycerol
-0.0
N.D.
+0.2
+0.2
N.D.
plant
Stem-Atlantic
+0.3
N.D.
-0.1
+0.3
N.D.
plant
Stem-Upstate
+0.2
N.D.
+0.2
+0.0
N.D.
plant
Norland
+0.3
N.D.
+0.3
-0.1
N.D.
carbon source
M9+polygalacturonate
+0.2
N.D.
+0.3
-0.1
N.D.
plant
Atlantic
+0.4
N.D.
+0.2
-0.1
N.D.
plant
Stem-Upstate
+0.2
N.D.
-0.0
+0.4
N.D.
plant
Stem-Upstate
+0.1
N.D.
+0.3
+0.2
N.D.
plant
Stem-Norland
+0.1
N.D.
+0.4
+0.4
N.D.
plant
Stem-Upstate
+0.5
N.D.
+0.3
+0.2
N.D.
plant
Stem-Upstate
+0.4
N.D.
+0.3
+0.3
N.D.
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