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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS01680 and DZA65_RS01685 are separated by 59 nucleotides
DZA65_RS01685 and DZA65_RS01695 are separated by 598 nucleotides
DZA65_RS01695 and DZA65_RS01700 are separated by 170 nucleotides
DZA65_RS01700 and DZA65_RS01705 are separated by 11 nucleotides
DZA65_RS01680: DZA65_RS01680 - penicillin-binding protein activator, at 364,815 to 366,866
_RS01680
DZA65_RS01685: DZA65_RS01685 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 366,926 to 367,795
_RS01685
DZA65_RS01695: DZA65_RS01695 - 4,5-DOPA dioxygenase extradiol, at 368,394 to 369,182
_RS01695
DZA65_RS01700: DZA65_RS01700 - glutathionylspermidine synthase family protein, at 369,353 to 370,513
_RS01700
DZA65_RS01705: DZA65_RS01705 - DUF1190 family protein, at 370,525 to 371,289
_RS01705
Group
Condition
DZA65
_RS01680
DZA65
_RS01685
DZA65
_RS01695
DZA65
_RS01700
DZA65
_RS01705
plant
Stem-Upstate
-1.0
+0.1
-0.0
-0.4
-0.1
plant
Stem-Atlantic
-0.6
-0.7
+0.2
-0.0
-0.1
plant
Stem-Upstate
-0.6
-1.0
+0.2
-0.2
+0.3
plant
Stem-Norland
-0.5
-0.2
+0.0
-0.4
-0.1
plant
Upstate
-0.6
-0.1
-0.4
-0.1
-0.0
control
PDB
-0.3
-0.4
-0.0
-0.3
-0.1
plant
Stem-Norland
-0.6
-0.3
-0.1
-0.0
-0.1
plant
Stem-Norland
-0.7
-0.4
+0.3
-0.2
-0.0
stress
3.75mM_PTB
-0.4
-0.3
+0.1
-0.1
-0.2
control
LB
-0.2
-0.5
+0.0
-0.1
-0.1
plant
Stem-Atlantic
-0.1
-0.8
+0.2
+0.0
-0.1
plant
Stem-Upstate
-0.3
-0.6
+0.6
-0.3
-0.1
plant
Stem-Upstate
-0.6
-0.1
+0.1
-0.0
-0.1
control
PDB
-0.4
-0.5
+0.1
-0.0
-0.0
plant
Upstate
-0.6
-0.0
+0.1
-0.2
+0.0
control
PDB
-0.3
-0.6
+0.3
-0.0
-0.0
plant
Stem-Atlantic
-0.1
-0.5
+0.3
-0.2
+0.1
plant
Stem-Norland
-0.2
+0.4
+0.1
-0.3
-0.2
plant
Stem-Atlantic
-0.2
-0.2
+0.3
+0.0
-0.1
plant
Stem-Norland
-0.6
+0.5
+0.1
-0.2
+0.1
control
PDB
-0.6
+0.2
+0.1
+0.1
+0.1
plant
Stem-Upstate
-0.5
+0.4
+0.4
-0.3
-0.1
control
PDB
-0.5
+0.3
+0.0
+0.1
+0.1
carbon source
M9+sucrose
-0.2
-0.3
+0.1
+0.1
+0.2
plant
Stem-Norland
-0.3
+0.1
+0.4
+0.1
-0.0
plant
Stem-Norland
-0.6
+0.1
+0.5
+0.1
+0.1
plant
Stem-Upstate
-0.4
+0.2
+0.3
+0.1
-0.1
plant
Stem-Upstate
-0.5
+0.8
+0.2
+0.1
-0.1
carbon source
M9+glycerol
+0.5
+0.3
+0.1
-0.2
+0.0
carbon source
M9+glycerol
+1.0
+0.3
-0.1
+0.0
+0.1
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