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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS01450 and DZA65_RS01455 are separated by 31 nucleotides
DZA65_RS01455 and DZA65_RS01460 are separated by 13 nucleotides
DZA65_RS01460 and DZA65_RS01465 are separated by 12 nucleotides
DZA65_RS01465 and DZA65_RS01470 are separated by 114 nucleotides
DZA65_RS01450: DZA65_RS01450 - AaeX family protein, at 322,170 to 322,373
_RS01450
DZA65_RS01455: DZA65_RS01455 - p-hydroxybenzoic acid efflux pump subunit AaeA, at 322,405 to 323,328
_RS01455
DZA65_RS01460: DZA65_RS01460 - p-hydroxybenzoic acid efflux pump subunit AaeB, at 323,342 to 325,291
_RS01460
DZA65_RS01465: DZA65_RS01465 - DUF1543 domain-containing protein, at 325,304 to 325,804
_RS01465
DZA65_RS01470: DZA65_RS01470 - LysE family transporter, at 325,919 to 326,545
_RS01470
Group
Condition
DZA65
_RS01450
DZA65
_RS01455
DZA65
_RS01460
DZA65
_RS01465
DZA65
_RS01470
carbon source
M9+glycerol
-0.2
-0.3
-0.1
-0.1
+0.2
plant
Stem-Norland
-0.0
-0.1
+0.2
-0.1
-0.5
control
LB
+0.1
-0.1
+0.0
-0.1
-0.4
plant
Stem-Atlantic
-0.1
+0.1
+0.1
-0.1
-0.4
plant
Norland
-0.1
+0.1
+0.0
+0.2
-0.4
plant
Stem-Atlantic
+0.0
+0.3
-0.2
-0.0
-0.3
plant
Stem-Atlantic
+0.1
+0.1
+0.1
-0.4
+0.1
control
PDB
+0.2
-0.0
+0.1
-0.1
-0.3
plant
Stem-Norland
-0.4
-0.0
-0.0
+0.3
+0.1
plant
Stem-Upstate
-0.0
+0.0
+0.3
-0.1
-0.2
plant
Stem-Norland
-0.4
-0.1
+0.2
+0.2
+0.2
control
LB
+0.2
+0.1
-0.1
-0.2
+0.1
carbon source
M9+glycerol
+0.2
-0.1
+0.0
-0.1
+0.2
control
PDB
-0.3
+0.1
+0.1
+0.3
-0.2
plant
Stem-Norland
+0.1
+0.1
+0.2
-0.4
+0.2
plant
Stem-Norland
+0.2
+0.4
+0.0
-0.5
-0.0
plant
Atlantic
-0.1
+0.0
+0.1
+0.3
-0.2
plant
Norland
-0.2
+0.2
-0.1
+0.3
+0.0
plant
Stem-Upstate
+0.6
-0.0
+0.4
-0.4
-0.3
plant
Norland
-0.2
+0.3
+0.0
+0.2
+0.1
carbon source
M9+starch
+0.3
-0.2
+0.1
-0.2
+0.3
plant
Upstate
-0.3
+0.2
+0.2
+0.4
+0.0
plant
Atlantic
-0.1
+0.1
+0.0
+0.5
-0.1
plant
Stem-Norland
+0.2
+0.1
-0.1
-0.2
+0.4
plant
Stem-Upstate
-0.1
+0.2
+0.1
-0.0
+0.4
carbon source
M9+sucrose
+0.2
+0.0
+0.1
+0.0
+0.2
carbon source
M9+sucrose
+0.2
+0.0
+0.1
-0.1
+0.4
plant
Stem-Upstate
+0.2
-0.2
+0.1
-0.2
+0.7
plant
Stem-Upstate
+0.3
-0.1
+0.1
+0.5
-0.0
carbon source
M9+starch
+0.2
+0.1
+0.1
+0.1
+0.4
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