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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS01420 and DZA65_RS01425 are separated by 24 nucleotides
DZA65_RS01425 and DZA65_RS01430 overlap by 11 nucleotides
DZA65_RS01430 and DZA65_RS01435 are separated by 109 nucleotides
DZA65_RS01435 and DZA65_RS01440 are separated by 46 nucleotides
DZA65_RS01420: DZA65_RS01420 - rod shape-determining protein MreD, at 312,824 to 313,312
_RS01420
DZA65_RS01425: DZA65_RS01425 - septum formation inhibitor Maf, at 313,337 to 313,930
_RS01425
DZA65_RS01430: DZA65_RS01430 - ribonuclease G, at 313,920 to 315,389
_RS01430
DZA65_RS01435: DZA65_RS01435 - AsmA2 domain-containing protein, at 315,499 to 319,335
_RS01435
DZA65_RS01440: DZA65_RS01440 - metalloprotease TldD, at 319,382 to 320,827
_RS01440
Group
Condition
DZA65
_RS01420
DZA65
_RS01425
DZA65
_RS01430
DZA65
_RS01435
DZA65
_RS01440
plant
Stem-Norland
N.D.
+0.0
-0.7
-0.8
-0.3
plant
Stem-Atlantic
N.D.
-0.0
-0.5
-0.9
-0.2
plant
Stem-Upstate
N.D.
+0.1
-0.6
-1.0
+0.1
stress
1.88mM_PTB
N.D.
-0.0
-1.1
-0.2
-0.1
stress
1.88mM_PTB
N.D.
+0.0
-0.9
-0.1
-0.3
plant
Stem-Atlantic
N.D.
-0.1
-0.2
-0.8
-0.1
control
LB
N.D.
-0.0
-1.0
-0.3
+0.0
control
LB
N.D.
-0.1
-0.8
-0.2
-0.1
carbon source
M9+sucrose
N.D.
+0.0
-0.6
-0.4
-0.1
carbon source
M9+polygalacturonate
N.D.
+0.2
-0.8
-0.5
-0.1
carbon source
M9+polygalacturonate
N.D.
+0.1
-0.8
-0.3
+0.1
control
LB
N.D.
+0.1
-0.7
-0.4
-0.0
plant
Stem-Norland
N.D.
+0.1
-0.3
-0.8
+0.2
plant
Stem-Atlantic
N.D.
+0.2
+0.2
-1.2
+0.0
carbon source
M9+sucrose
N.D.
+0.1
-0.7
-0.3
+0.1
plant
Stem-Atlantic
N.D.
-0.1
-0.4
-0.5
+0.3
carbon source
M9+polygalacturonate
N.D.
+0.2
-0.4
-0.4
-0.0
plant
Stem-Norland
N.D.
+0.1
-0.3
-0.7
+0.2
plant
Stem-Norland
N.D.
+0.2
-0.2
-0.7
+0.1
plant
Stem-Upstate
N.D.
+0.5
-0.3
-0.8
+0.0
control
LB
N.D.
+0.3
-0.8
+0.1
+0.0
carbon source
M9+starch
N.D.
+0.4
-0.4
-0.2
-0.1
control
PDB
N.D.
-0.2
-0.4
+0.1
+0.2
plant
Stem-Upstate
N.D.
+0.3
-0.0
-0.7
+0.2
plant
Stem-Atlantic
N.D.
+0.2
+0.4
-0.8
+0.1
plant
Stem-Norland
N.D.
+0.2
-0.1
-0.7
+0.3
plant
Stem-Norland
N.D.
+0.3
+0.2
-0.7
-0.0
plant
Stem-Upstate
N.D.
+0.4
+0.3
-1.1
+0.3
plant
Stem-Upstate
N.D.
+0.7
+0.1
-0.8
+0.2
plant
Stem-Norland
N.D.
-0.0
+0.6
-0.6
+0.3
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