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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS01220 and DZA65_RS01225 are separated by 105 nucleotides
DZA65_RS01225 and DZA65_RS01230 are separated by 55 nucleotides
DZA65_RS01230 and DZA65_RS01235 overlap by 4 nucleotides
DZA65_RS01235 and DZA65_RS01240 are separated by 91 nucleotides
DZA65_RS01220: DZA65_RS01220 - Rsd/AlgQ family anti-sigma factor, at 273,367 to 273,819
_RS01220
DZA65_RS01225: DZA65_RS01225 - NAD(+) diphosphatase, at 273,925 to 274,698
_RS01225
DZA65_RS01230: DZA65_RS01230 - uroporphyrinogen decarboxylase, at 274,754 to 275,827
_RS01230
DZA65_RS01235: DZA65_RS01235 - deoxyribonuclease V, at 275,824 to 276,501
_RS01235
DZA65_RS01240: DZA65_RS01240 - YjaG family protein, at 276,593 to 277,183
_RS01240
Group
Condition
DZA65
_RS01220
DZA65
_RS01225
DZA65
_RS01230
DZA65
_RS01235
DZA65
_RS01240
control
LB
-0.3
-0.3
N.D.
-0.1
-0.8
carbon source
M9+glycerol
-0.1
-0.5
N.D.
-0.1
-0.5
control
LB
-0.1
-0.1
N.D.
-0.1
-0.4
carbon source
M9+sucrose
-0.0
-0.1
N.D.
-0.0
-0.6
control
LB
-0.1
-0.1
N.D.
+0.1
-0.6
carbon source
M9+glycerol
+0.2
-0.1
N.D.
-0.2
-0.5
stress
1.88mM_PTB
+0.2
-0.2
N.D.
-0.1
-0.4
plant
Upstate
+0.0
+0.1
N.D.
-0.2
-0.4
carbon source
M9+sucrose
-0.1
+0.2
N.D.
-0.1
-0.5
plant
Norland
+0.0
+0.2
N.D.
+0.0
-0.7
control
PDB
-0.1
+0.2
N.D.
-0.1
-0.4
carbon source
M9+glycerol
+0.1
-0.1
N.D.
+0.1
-0.5
carbon source
M9+sucrose
+0.2
+0.1
N.D.
+0.0
-0.7
control
PDB
+0.0
+0.2
N.D.
-0.0
-0.5
plant
Atlantic
-0.0
+0.2
N.D.
+0.2
-0.6
plant
Stem-Norland
+0.1
+0.3
N.D.
-0.0
-0.7
plant
Atlantic
+0.3
-0.0
N.D.
-0.1
-0.4
control
PDB
+0.1
+0.1
N.D.
+0.1
-0.4
plant
Stem-Atlantic
+0.1
+0.2
N.D.
-0.0
-0.4
plant
Upstate
+0.2
+0.1
N.D.
+0.1
-0.4
plant
Stem-Norland
-0.1
+0.5
N.D.
+0.1
-0.6
plant
Stem-Norland
-0.5
+0.4
N.D.
+0.1
+0.0
plant
Atlantic
+0.3
+0.1
N.D.
+0.1
-0.4
plant
Stem-Norland
+0.1
+0.2
N.D.
+0.2
-0.3
plant
Stem-Upstate
+0.3
+0.4
N.D.
-0.2
-0.3
plant
Stem-Upstate
-0.1
+0.2
N.D.
+0.3
-0.2
plant
Stem-Norland
+0.3
+0.3
N.D.
+0.1
-0.2
plant
Stem-Upstate
+0.4
+0.3
N.D.
+0.2
-0.1
plant
Stem-Upstate
+0.4
+0.1
N.D.
+0.4
+0.2
plant
Stem-Upstate
+0.1
+0.5
N.D.
+0.5
+0.2
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