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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS01045 and DZA65_RS01050 are separated by 41 nucleotides
DZA65_RS01050 and DZA65_RS01055 are separated by 18 nucleotides
DZA65_RS01055 and DZA65_RS01065 are separated by 373 nucleotides
DZA65_RS01065 and DZA65_RS01070 are separated by 82 nucleotides
DZA65_RS01045: DZA65_RS01045 - IMPACT family protein, at 237,351 to 237,965
_RS01045
DZA65_RS01050: DZA65_RS01050 - Trk system potassium transporter TrkH, at 238,007 to 239,458
_RS01050
DZA65_RS01055: DZA65_RS01055 - menaquinone-dependent protoporphyrinogen IX dehydrogenase, at 239,477 to 240,016
_RS01055
DZA65_RS01065: DZA65_RS01065 - 16S ribosomal RNA, at 240,390 to 241,937
_RS01065
DZA65_RS01070: DZA65_RS01070 - tRNA-Glu, at 242,020 to 242,095
_RS01070
Group
Condition
DZA65
_RS01045
DZA65
_RS01050
DZA65
_RS01055
DZA65
_RS01065
DZA65
_RS01070
carbon source
M9+glycerol
-0.0
-1.4
N.D.
N.D.
N.D.
carbon source
M9+glycerol
-0.1
-1.3
N.D.
N.D.
N.D.
stress
3.75mM_PTB
-0.0
-1.2
N.D.
N.D.
N.D.
stress
3.75mM_PTB
+0.0
-1.2
N.D.
N.D.
N.D.
carbon source
M9+glycerol
+0.0
-1.2
N.D.
N.D.
N.D.
plant
Stem-Upstate
-0.1
-0.9
N.D.
N.D.
N.D.
stress
3.75mM_PTB
-0.1
-0.9
N.D.
N.D.
N.D.
carbon source
M9+glycerol
-0.2
-0.8
N.D.
N.D.
N.D.
carbon source
M9+glycerol
-0.1
-0.8
N.D.
N.D.
N.D.
stress
3.75mM_PTB
+0.0
-0.8
N.D.
N.D.
N.D.
plant
Stem-Atlantic
-0.1
-0.7
N.D.
N.D.
N.D.
carbon source
M9+glycerol
+0.0
-0.8
N.D.
N.D.
N.D.
control
LB
+0.2
-0.8
N.D.
N.D.
N.D.
plant
Norland
-0.1
-0.4
N.D.
N.D.
N.D.
plant
Stem-Norland
-0.3
-0.3
N.D.
N.D.
N.D.
control
LB
+0.2
-0.7
N.D.
N.D.
N.D.
plant
Stem-Norland
+0.1
-0.5
N.D.
N.D.
N.D.
plant
Stem-Atlantic
+0.1
-0.5
N.D.
N.D.
N.D.
control
LB
+0.1
-0.5
N.D.
N.D.
N.D.
plant
Atlantic
+0.1
-0.4
N.D.
N.D.
N.D.
plant
Norland
+0.1
-0.4
N.D.
N.D.
N.D.
plant
Stem-Atlantic
+0.2
-0.5
N.D.
N.D.
N.D.
plant
Atlantic
+0.2
-0.3
N.D.
N.D.
N.D.
plant
Stem-Norland
+0.3
-0.4
N.D.
N.D.
N.D.
plant
Atlantic
+0.2
-0.3
N.D.
N.D.
N.D.
plant
Stem-Atlantic
+0.3
-0.2
N.D.
N.D.
N.D.
plant
Stem-Norland
+0.5
-0.3
N.D.
N.D.
N.D.
control
PDB
+0.1
+0.4
N.D.
N.D.
N.D.
carbon source
M9+starch
+0.3
+0.3
N.D.
N.D.
N.D.
control
PDB
+0.2
+0.4
N.D.
N.D.
N.D.
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