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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS01030 and DZA65_RS01035 are separated by 12 nucleotides
DZA65_RS01035 and DZA65_RS01040 are separated by 181 nucleotides
DZA65_RS01040 and DZA65_RS01045 overlap by 1 nucleotides
DZA65_RS01045 and DZA65_RS01050 are separated by 41 nucleotides
DZA65_RS01030: DZA65_RS01030 - acetyl-CoA C-acyltransferase FadA, at 232,473 to 233,636
_RS01030
DZA65_RS01035: DZA65_RS01035 - fatty acid oxidation complex subunit alpha FadB, at 233,649 to 235,838
_RS01035
DZA65_RS01040: DZA65_RS01040 - Xaa-Pro dipeptidase, at 236,020 to 237,351
_RS01040
DZA65_RS01045: DZA65_RS01045 - IMPACT family protein, at 237,351 to 237,965
_RS01045
DZA65_RS01050: DZA65_RS01050 - Trk system potassium transporter TrkH, at 238,007 to 239,458
_RS01050
Group
Condition
DZA65
_RS01030
DZA65
_RS01035
DZA65
_RS01040
DZA65
_RS01045
DZA65
_RS01050
carbon source
M9+glycerol
-0.2
-0.0
-0.1
-0.1
-1.3
carbon source
M9+glycerol
-0.3
+0.1
+0.0
-0.0
-1.4
carbon source
M9+glycerol
-0.0
-0.0
+0.0
+0.0
-1.2
stress
3.75mM_PTB
-0.0
-0.1
+0.0
-0.1
-0.9
carbon source
M9+glycerol
-0.2
-0.0
-0.0
-0.1
-0.8
plant
Stem-Norland
-0.6
-0.1
+0.2
-0.3
-0.3
stress
3.75mM_PTB
+0.1
+0.0
+0.1
-0.0
-1.2
plant
Stem-Norland
-1.1
+0.1
+0.1
-0.1
-0.0
carbon source
M9+glycerol
+0.0
+0.0
-0.0
-0.2
-0.8
plant
Atlantic
-0.4
-0.2
-0.0
+0.1
-0.3
plant
Stem-Atlantic
-0.0
+0.1
-0.0
-0.1
-0.7
plant
Stem-Norland
-0.6
-0.1
+0.1
-0.2
+0.1
plant
Stem-Norland
-0.2
-0.2
+0.1
+0.1
-0.5
control
LB
-0.1
+0.1
-0.0
+0.2
-0.8
stress
3.75mM_PTB
-0.0
+0.0
+0.2
+0.0
-0.8
plant
Stem-Upstate
+0.1
+0.2
+0.1
-0.1
-0.9
stress
3.75mM_PTB
+0.5
+0.1
+0.0
+0.0
-1.2
plant
Atlantic
-0.3
-0.1
+0.1
+0.2
-0.3
carbon source
M9+polygalacturonate
-0.3
-0.3
-0.0
+0.3
-0.1
plant
Stem-Upstate
-0.5
+0.0
+0.3
+0.0
-0.2
control
LB
+0.3
-0.0
-0.0
+0.2
-0.7
plant
Stem-Norland
-0.2
-0.0
+0.2
+0.3
-0.4
control
LB
+0.2
+0.1
-0.1
+0.1
-0.5
plant
Stem-Upstate
-0.2
+0.4
+0.2
-0.0
-0.4
plant
Stem-Atlantic
+0.3
+0.1
-0.2
+0.2
-0.5
plant
Norland
+0.4
+0.1
-0.0
+0.1
-0.4
control
PDB
-0.3
+0.1
-0.1
+0.1
+0.4
plant
Stem-Upstate
-0.2
-0.0
+0.4
+0.3
-0.2
control
PDB
-0.4
-0.0
+0.0
+0.2
+0.4
plant
Stem-Norland
+0.0
+0.0
+0.2
+0.5
-0.3
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