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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS00930 and DZA65_RS00935 are separated by 214 nucleotides
DZA65_RS00935 and DZA65_RS00940 are separated by 24 nucleotides
DZA65_RS00940 and DZA65_RS00945 are separated by 116 nucleotides
DZA65_RS00945 and DZA65_RS00950 are separated by 188 nucleotides
DZA65_RS00930: DZA65_RS00930 - acetylornithine deacetylase, at 213,166 to 214,317
_RS00930
DZA65_RS00935: DZA65_RS00935 - N-acetyl-gamma-glutamyl-phosphate reductase, at 214,532 to 215,536
_RS00935
DZA65_RS00940: DZA65_RS00940 - acetylglutamate kinase, at 215,561 to 216,334
_RS00940
DZA65_RS00945: DZA65_RS00945 - argininosuccinate lyase, at 216,451 to 217,824
_RS00945
DZA65_RS00950: DZA65_RS00950 - DNA recombination protein RmuC, at 218,013 to 219,545
_RS00950
Group
Condition
DZA65
_RS00930
DZA65
_RS00935
DZA65
_RS00940
DZA65
_RS00945
DZA65
_RS00950
carbon source
M9+polygalacturonate
-2.0
-2.4
-3.9
-3.5
+0.2
carbon source
M9+polygalacturonate
-2.3
-2.8
-2.9
-3.3
-0.0
carbon source
M9+polygalacturonate
-1.9
-2.6
-3.4
-3.0
+0.1
carbon source
M9+sucrose
-2.4
-2.4
-3.4
-2.4
+0.3
carbon source
M9+sucrose
-1.5
-2.7
-3.6
-2.6
+0.1
carbon source
M9+sucrose
-2.0
-2.7
-2.6
-2.5
+0.2
carbon source
M9+glycerol
-1.7
-2.2
-2.7
-2.3
+0.1
carbon source
M9+glycerol
-1.8
-2.4
-2.3
-2.3
+0.0
carbon source
M9+glycerol
-2.0
-2.0
-2.4
-2.4
+0.0
plant
Stem-Upstate
-1.8
-2.1
-2.0
-2.8
-0.1
plant
Stem-Upstate
-1.6
-2.1
-2.0
-3.0
-0.0
carbon source
M9+glycerol
-1.6
-2.6
-2.0
-2.4
-0.0
plant
Stem-Norland
-1.9
-1.8
-2.0
-2.8
-0.0
carbon source
M9+glycerol
-1.3
-2.5
-1.9
-2.1
+0.1
plant
Stem-Norland
-1.4
-1.4
-1.6
-2.9
-0.3
plant
Stem-Atlantic
-1.3
-1.5
-2.1
-2.6
-0.1
carbon source
M9+glycerol
-1.1
-2.1
-2.2
-2.1
+0.1
carbon source
M9+starch
-1.4
-1.9
-1.3
-2.6
+0.1
plant
Stem-Upstate
-1.5
-1.5
-1.3
-2.6
-0.0
carbon source
M9+starch
-1.1
-2.0
-1.6
-2.3
+0.1
plant
Stem-Upstate
-1.5
-1.6
-1.4
-2.4
+0.1
plant
Stem-Atlantic
-1.0
-1.4
-1.5
-2.3
-0.2
plant
Stem-Atlantic
-0.8
-1.3
-1.5
-2.8
+0.0
plant
Stem-Upstate
-1.4
-1.3
-1.1
-2.2
-0.1
plant
Stem-Atlantic
-0.7
-1.3
-1.9
-2.1
-0.1
plant
Stem-Norland
-1.2
-1.4
-1.0
-2.5
-0.0
carbon source
M9+starch
-1.3
-1.4
-1.4
-1.9
+0.0
plant
Stem-Norland
-0.8
-1.2
-1.3
-2.2
+0.0
plant
Stem-Atlantic
-0.6
-1.1
-1.5
-2.1
-0.1
plant
Stem-Upstate
-1.1
-1.3
-1.2
-1.8
+0.0
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