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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS00905 and DZA65_RS00910 overlap by 8 nucleotides
DZA65_RS00910 and DZA65_RS00915 are separated by 54 nucleotides
DZA65_RS00915 and DZA65_RS00920 are separated by 401 nucleotides
DZA65_RS00920 and DZA65_RS00925 are separated by 11 nucleotides
DZA65_RS00905: DZA65_RS00905 - ThiF family adenylyltransferase, at 205,176 to 206,270
_RS00905
DZA65_RS00910: DZA65_RS00910 - ThiF family adenylyltransferase, at 206,263 to 207,396
_RS00910
DZA65_RS00915: DZA65_RS00915 - hypothetical protein, at 207,451 to 207,645
_RS00915
DZA65_RS00920: DZA65_RS00920 - hypothetical protein, at 208,047 to 210,521
_RS00920
DZA65_RS00925: DZA65_RS00925 - hypothetical protein, at 210,533 to 213,097
_RS00925
Group
Condition
DZA65
_RS00905
DZA65
_RS00910
DZA65
_RS00915
DZA65
_RS00920
DZA65
_RS00925
control
PDB
-0.1
-0.3
N.D.
-0.3
+0.0
plant
Stem-Norland
-0.5
-0.2
N.D.
+0.4
-0.2
control
LB
+0.1
-0.4
N.D.
-0.2
+0.1
plant
Stem-Atlantic
-0.2
-0.2
N.D.
+0.2
+0.1
plant
Stem-Upstate
+0.2
-0.2
N.D.
+0.2
-0.1
plant
Stem-Upstate
-0.6
-0.0
N.D.
+0.6
+0.1
plant
Stem-Upstate
+0.2
-0.3
N.D.
+0.2
-0.0
stress
1.88mM_PTB
+0.4
+0.0
N.D.
-0.3
+0.0
stress
3.75mM_PTB
+0.2
+0.2
N.D.
-0.2
-0.0
plant
Stem-Upstate
+0.5
-0.4
N.D.
+0.0
-0.1
control
PDB
+0.2
+0.2
N.D.
-0.2
-0.0
plant
Norland
-0.2
+0.2
N.D.
+0.2
+0.1
plant
Stem-Upstate
+0.6
-0.1
N.D.
-0.2
-0.1
stress
3.75mM_PTB
+0.3
+0.3
N.D.
-0.3
+0.1
plant
Stem-Norland
+0.5
+0.0
N.D.
-0.3
+0.1
plant
Stem-Atlantic
+0.2
-0.1
N.D.
+0.4
-0.0
plant
Atlantic
+0.2
-0.1
N.D.
+0.3
+0.0
carbon source
M9+starch
+0.4
-0.1
N.D.
+0.2
+0.1
plant
Upstate
+0.4
-0.1
N.D.
+0.2
+0.0
carbon source
M9+sucrose
+0.3
+0.2
N.D.
+0.1
+0.1
stress
1.88mM_PTB
+0.5
+0.3
N.D.
-0.1
-0.1
plant
Stem-Upstate
+0.5
+0.1
N.D.
+0.0
+0.1
stress
1.88mM_PTB
+0.3
+0.2
N.D.
+0.0
+0.1
carbon source
M9+polygalacturonate
+0.4
+0.3
N.D.
+0.1
+0.1
plant
Norland
+0.3
+0.3
N.D.
+0.2
+0.0
plant
Upstate
+0.5
+0.2
N.D.
+0.1
+0.0
plant
Stem-Norland
+0.4
+0.1
N.D.
+0.3
+0.1
plant
Stem-Upstate
+0.7
+0.1
N.D.
+0.0
+0.0
plant
Stem-Norland
+0.8
-0.2
N.D.
+0.4
-0.0
plant
Upstate
+0.4
+0.4
N.D.
+0.3
+0.1
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