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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS00895 and DZA65_RS00900 are separated by 300 nucleotides
DZA65_RS00900 and DZA65_RS00905 overlap by 20 nucleotides
DZA65_RS00905 and DZA65_RS00910 overlap by 8 nucleotides
DZA65_RS00910 and DZA65_RS00915 are separated by 54 nucleotides
DZA65_RS00895: DZA65_RS00895 - phosphoenolpyruvate carboxylase, at 200,126 to 202,765
_RS00895
DZA65_RS00900: DZA65_RS00900 - ATP-binding cassette domain-containing protein, at 203,066 to 205,195
_RS00900
DZA65_RS00905: DZA65_RS00905 - ThiF family adenylyltransferase, at 205,176 to 206,270
_RS00905
DZA65_RS00910: DZA65_RS00910 - ThiF family adenylyltransferase, at 206,263 to 207,396
_RS00910
DZA65_RS00915: DZA65_RS00915 - hypothetical protein, at 207,451 to 207,645
_RS00915
Group
Condition
DZA65
_RS00895
DZA65
_RS00900
DZA65
_RS00905
DZA65
_RS00910
DZA65
_RS00915
carbon source
M9+sucrose
-2.7
-0.3
-0.3
-0.1
N.D.
plant
Stem-Atlantic
+0.1
-3.0
-0.1
+0.0
N.D.
plant
Stem-Atlantic
-0.1
-2.7
+0.2
-0.1
N.D.
carbon source
M9+sucrose
-2.4
-0.3
+0.1
-0.1
N.D.
carbon source
M9+glycerol
-2.3
-0.1
-0.2
+0.0
N.D.
plant
Stem-Upstate
-0.1
-1.9
-0.6
-0.0
N.D.
plant
Stem-Upstate
+0.0
-2.5
+0.2
-0.2
N.D.
carbon source
M9+sucrose
-2.4
-0.6
+0.3
+0.2
N.D.
carbon source
M9+glycerol
-2.3
-0.6
+0.3
+0.0
N.D.
plant
Stem-Atlantic
-0.1
-2.5
-0.0
+0.0
N.D.
carbon source
M9+starch
-2.3
-0.1
-0.0
-0.1
N.D.
carbon source
M9+glycerol
-2.2
-0.2
+0.0
-0.2
N.D.
carbon source
M9+glycerol
-2.1
-0.2
+0.1
-0.1
N.D.
carbon source
M9+glycerol
-2.2
-0.1
+0.0
-0.0
N.D.
plant
Stem-Atlantic
+0.1
-2.4
-0.0
-0.0
N.D.
plant
Stem-Norland
+0.0
-2.1
-0.2
-0.0
N.D.
plant
Stem-Atlantic
+0.0
-1.8
-0.2
-0.2
N.D.
carbon source
M9+glycerol
-2.2
+0.2
+0.0
-0.2
N.D.
carbon source
M9+polygalacturonate
-2.6
+0.2
-0.0
+0.3
N.D.
carbon source
M9+starch
-2.2
-0.2
+0.2
-0.0
N.D.
carbon source
M9+starch
-2.2
-0.2
+0.4
-0.1
N.D.
plant
Stem-Atlantic
-0.0
-2.2
-0.1
+0.4
N.D.
carbon source
M9+polygalacturonate
-2.6
+0.3
+0.4
+0.0
N.D.
plant
Stem-Norland
-0.0
-2.2
+0.1
+0.2
N.D.
plant
Stem-Norland
-0.0
-2.2
+0.5
+0.0
N.D.
carbon source
M9+polygalacturonate
-2.5
+0.2
+0.4
+0.3
N.D.
plant
Stem-Norland
+0.1
-2.4
+0.8
-0.2
N.D.
plant
Stem-Norland
+0.1
-2.1
+0.2
+0.1
N.D.
plant
Stem-Upstate
+0.3
-1.5
+0.6
-0.1
N.D.
plant
Stem-Upstate
+0.0
-1.6
+0.7
+0.1
N.D.
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