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Gene
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Cofit
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS00560 and DZA65_RS00565 are separated by 157 nucleotides
DZA65_RS00565 and DZA65_RS00570 are separated by 182 nucleotides
DZA65_RS00570 and DZA65_RS00575 are separated by 344 nucleotides
DZA65_RS00575 and DZA65_RS00580 are separated by 129 nucleotides
DZA65_RS00560: DZA65_RS00560 - hypothetical protein, at 128,600 to 130,171
_RS00560
DZA65_RS00565: DZA65_RS00565 - hypothetical protein, at 130,329 to 131,759
_RS00565
DZA65_RS00570: DZA65_RS00570 - IS3 family transposase, at 131,942 to 133,050
_RS00570
DZA65_RS00575: DZA65_RS00575 - YicC family protein, at 133,395 to 134,258
_RS00575
DZA65_RS00580: DZA65_RS00580 - LysR family transcriptional regulator, at 134,388 to 135,296
_RS00580
Group
Condition
DZA65
_RS00560
DZA65
_RS00565
DZA65
_RS00570
DZA65
_RS00575
DZA65
_RS00580
plant
Stem-Upstate
-0.3
+0.2
-1.6
-0.3
+0.2
carbon source
M9+starch
+0.1
-0.3
-0.9
+0.1
-0.0
control
PDB
-0.5
-0.2
+0.4
-0.6
-0.0
plant
Atlantic
-0.6
-0.0
-0.4
+0.3
-0.0
plant
Stem-Norland
-0.3
-0.2
-0.7
+0.7
+0.4
plant
Atlantic
+0.3
-0.3
-0.2
-0.3
+0.3
control
PDB
+0.3
-0.4
+0.6
-0.4
-0.0
plant
Stem-Upstate
-0.8
-0.1
-0.4
+0.9
+0.5
plant
Stem-Norland
+0.2
-0.8
+0.5
+0.4
+0.1
plant
Stem-Upstate
+0.1
-1.3
+1.0
+0.6
+0.2
plant
Upstate
-0.2
-0.0
+0.3
+0.6
-0.2
plant
Stem-Atlantic
-0.3
-0.1
+0.5
+0.5
-0.0
plant
Stem-Norland
-0.4
+0.1
+0.1
+0.8
-0.0
carbon source
M9+glycerol
-0.2
-0.3
+0.7
+0.4
+0.0
plant
Stem-Atlantic
-0.3
+0.1
+0.7
-0.0
+0.3
plant
Atlantic
+0.6
-0.1
+0.8
-0.2
-0.2
carbon source
M9+polygalacturonate
+0.8
+0.4
-0.6
+0.1
+0.2
control
LB
-0.1
+0.6
+0.4
+0.2
-0.0
plant
Stem-Atlantic
-0.1
-0.1
+1.1
-0.1
+0.2
plant
Stem-Norland
+0.3
+0.3
-0.2
+0.9
-0.1
carbon source
M9+polygalacturonate
+0.7
+0.4
+0.2
-0.1
+0.2
plant
Stem-Upstate
+0.3
-0.1
-0.6
+1.2
+0.6
plant
Upstate
+0.4
+0.2
+0.8
+0.0
-0.0
plant
Stem-Atlantic
-0.1
-0.1
+0.8
+0.7
+0.1
plant
Stem-Upstate
+0.4
-0.7
+0.6
+0.9
+0.4
plant
Stem-Norland
-0.6
-0.0
+1.1
+0.7
+0.7
plant
Stem-Atlantic
+0.0
+0.3
+0.6
+0.7
+0.3
plant
Stem-Norland
+0.4
+0.3
+1.2
+0.3
+0.5
plant
Stem-Norland
+0.3
+1.0
+0.3
+1.1
+0.1
plant
Stem-Upstate
+0.3
+0.7
+0.8
+0.2
+0.8
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