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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS00525 and DZA65_RS00530 are separated by 122 nucleotides
DZA65_RS00530 and DZA65_RS00535 are separated by 337 nucleotides
DZA65_RS00535 and DZA65_RS00540 are separated by 98 nucleotides
DZA65_RS00540 and DZA65_RS00545 are separated by 7 nucleotides
DZA65_RS00525: DZA65_RS00525 - hypothetical protein, at 123,766 to 123,993
_RS00525
DZA65_RS00530: DZA65_RS00530 - DUF1471 domain-containing protein, at 124,116 to 124,364
_RS00530
DZA65_RS00535: DZA65_RS00535 - helix-turn-helix transcriptional regulator, at 124,702 to 125,055
_RS00535
DZA65_RS00540: DZA65_RS00540 - transcriptional regulator, at 125,154 to 125,411
_RS00540
DZA65_RS00545: DZA65_RS00545 - helix-turn-helix transcriptional regulator, at 125,419 to 125,751
_RS00545
Group
Condition
DZA65
_RS00525
DZA65
_RS00530
DZA65
_RS00535
DZA65
_RS00540
DZA65
_RS00545
plant
Stem-Upstate
-0.2
-3.4
+0.4
-0.0
-0.8
plant
Stem-Upstate
-1.1
-1.9
+0.6
+0.1
-0.5
carbon source
M9+sucrose
+0.1
-3.1
+0.3
-0.1
+0.0
control
PDB
-0.2
-1.8
-0.1
-0.1
+0.0
plant
Stem-Upstate
+0.3
-2.2
-0.4
+0.4
-0.3
plant
Stem-Norland
-0.2
-2.1
+0.5
-0.0
-0.1
plant
Stem-Atlantic
+0.0
-1.2
-0.3
-0.2
-0.2
plant
Stem-Norland
-0.2
-1.4
-0.6
+0.0
+0.2
stress
1.88mM_PTB
+0.3
-2.1
+0.2
+0.1
+0.0
carbon source
M9+polygalacturonate
+0.3
-1.1
-0.2
-0.4
-0.2
carbon source
M9+glycerol
-0.6
-1.3
+0.5
+0.1
-0.1
carbon source
M9+starch
-0.1
-1.6
+0.4
-0.0
+0.0
stress
1.88mM_PTB
+0.1
-1.0
-0.3
+0.1
+0.1
plant
Stem-Atlantic
-0.4
+0.5
-1.4
+0.2
+0.1
plant
Atlantic
-0.5
+0.9
-0.8
-0.0
-0.4
control
PDB
-0.2
+0.4
-0.5
-0.2
-0.3
plant
Stem-Upstate
+0.4
-0.9
-0.3
+0.2
+0.0
plant
Stem-Upstate
-0.0
-1.0
+0.4
+0.1
+0.1
plant
Upstate
-0.2
-0.4
-0.3
+0.5
+0.1
plant
Stem-Upstate
+0.1
-0.3
+0.3
+0.5
-0.8
plant
Upstate
-0.2
+0.4
-0.6
+0.1
+0.1
plant
Stem-Norland
-0.9
+0.9
-0.1
-0.1
+0.1
plant
Stem-Atlantic
-0.4
+0.9
-0.5
+0.0
+0.1
control
PDB
+0.3
+0.5
-0.7
+0.0
+0.0
plant
Stem-Norland
-0.2
+0.9
-0.3
+0.0
-0.1
plant
Atlantic
+0.1
+0.6
-0.6
-0.0
+0.2
plant
Upstate
-0.3
+1.1
-0.5
+0.2
-0.2
control
PDB
-0.2
+0.8
-0.4
+0.3
+0.1
plant
Stem-Norland
+0.0
+1.9
-1.0
+0.2
+0.0
plant
Stem-Norland
-0.3
+2.2
+0.4
-0.3
+0.1
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