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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS00335 and DZA65_RS00340 are separated by 193 nucleotides
DZA65_RS00340 and DZA65_RS00345 are separated by 99 nucleotides
DZA65_RS00345 and DZA65_RS00350 are separated by 10 nucleotides
DZA65_RS00350 and DZA65_RS00355 are separated by 119 nucleotides
DZA65_RS00335: DZA65_RS00335 - DJ-1/PfpI family protein, at 81,950 to 82,525
_RS00335
DZA65_RS00340: DZA65_RS00340 - metal/formaldehyde-sensitive transcriptional repressor, at 82,719 to 82,997
_RS00340
DZA65_RS00345: DZA65_RS00345 - nickel/cobalt efflux protein RcnA, at 83,097 to 83,990
_RS00345
DZA65_RS00350: DZA65_RS00350 - hypothetical protein, at 84,001 to 84,198
_RS00350
DZA65_RS00355: DZA65_RS00355 - argininosuccinate synthase, at 84,318 to 85,667
_RS00355
Group
Condition
DZA65
_RS00335
DZA65
_RS00340
DZA65
_RS00345
DZA65
_RS00350
DZA65
_RS00355
plant
Stem-Norland
-0.3
N.D.
+0.1
-4.1
-2.1
plant
Stem-Upstate
+0.3
N.D.
+0.1
-4.1
-2.4
carbon source
M9+sucrose
-0.1
N.D.
-0.1
-3.2
-2.4
plant
Stem-Upstate
+0.1
N.D.
+0.3
-3.3
-2.7
carbon source
M9+polygalacturonate
-0.3
N.D.
-0.1
-1.9
-3.1
plant
Stem-Atlantic
-0.1
N.D.
+0.1
-2.8
-2.3
plant
Stem-Atlantic
-0.1
N.D.
+0.0
-3.0
-2.0
plant
Stem-Atlantic
-0.2
N.D.
+0.2
-2.9
-2.0
carbon source
M9+polygalacturonate
-0.1
N.D.
+0.0
-1.7
-3.1
plant
Stem-Atlantic
-0.3
N.D.
-0.1
-2.5
-1.8
carbon source
M9+sucrose
-0.2
N.D.
-0.1
-1.5
-2.5
plant
Stem-Norland
+0.1
N.D.
-0.5
-1.9
-2.0
carbon source
M9+polygalacturonate
+0.0
N.D.
-0.1
-1.0
-3.1
carbon source
M9+sucrose
-0.0
N.D.
+0.3
-2.3
-2.1
plant
Stem-Norland
+0.1
N.D.
+0.2
-1.5
-2.2
plant
Stem-Norland
-0.3
N.D.
-0.2
-1.7
-1.1
plant
Stem-Upstate
+0.0
N.D.
-0.1
-1.5
-1.6
plant
Stem-Upstate
-0.0
N.D.
-0.1
-0.9
-2.1
plant
Stem-Norland
-0.1
N.D.
+0.1
-0.3
-2.7
plant
Stem-Upstate
-0.3
N.D.
+0.2
-0.6
-2.1
carbon source
M9+starch
-0.1
N.D.
-0.0
-0.4
-2.2
carbon source
M9+starch
-0.3
N.D.
-0.1
-0.6
-1.7
plant
Stem-Atlantic
-0.1
N.D.
+0.2
-0.7
-1.8
plant
Stem-Upstate
+0.2
N.D.
-0.1
-1.6
-0.8
carbon source
M9+glycerol
-0.0
N.D.
-0.0
+0.4
-2.7
plant
Stem-Norland
+0.3
N.D.
+0.2
-1.3
-1.4
plant
Stem-Upstate
+0.5
N.D.
+0.6
-0.9
-2.2
carbon source
M9+glycerol
-0.0
N.D.
-0.0
+0.4
-2.3
carbon source
M9+glycerol
-0.0
N.D.
+0.0
+0.7
-2.3
carbon source
M9+glycerol
-0.0
N.D.
+0.0
+0.9
-2.3
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