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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS00325 and DZA65_RS00330 are separated by 191 nucleotides
DZA65_RS00330 and DZA65_RS00335 are separated by 41 nucleotides
DZA65_RS00335 and DZA65_RS00340 are separated by 193 nucleotides
DZA65_RS00340 and DZA65_RS00345 are separated by 99 nucleotides
DZA65_RS00325: DZA65_RS00325 - sugar ABC transporter permease, at 79,309 to 80,493
_RS00325
DZA65_RS00330: DZA65_RS00330 - DNA-binding transcriptional regulator, at 80,685 to 81,908
_RS00330
DZA65_RS00335: DZA65_RS00335 - DJ-1/PfpI family protein, at 81,950 to 82,525
_RS00335
DZA65_RS00340: DZA65_RS00340 - metal/formaldehyde-sensitive transcriptional repressor, at 82,719 to 82,997
_RS00340
DZA65_RS00345: DZA65_RS00345 - nickel/cobalt efflux protein RcnA, at 83,097 to 83,990
_RS00345
Group
Condition
DZA65
_RS00325
DZA65
_RS00330
DZA65
_RS00335
DZA65
_RS00340
DZA65
_RS00345
carbon source
M9+sucrose
-0.2
-0.2
-0.2
N.D.
-0.1
plant
Stem-Norland
-0.3
+0.1
+0.1
N.D.
-0.5
stress
3.75mM_PTB
-0.1
-0.0
-0.1
N.D.
-0.3
plant
Upstate
+0.1
+0.0
-0.4
N.D.
-0.2
plant
Atlantic
-0.1
-0.0
-0.5
N.D.
+0.2
carbon source
M9+starch
-0.0
+0.1
-0.3
N.D.
-0.1
plant
Stem-Atlantic
+0.0
+0.1
-0.2
N.D.
-0.3
control
PDB
+0.1
+0.0
-0.1
N.D.
-0.3
control
LB
-0.2
-0.2
-0.1
N.D.
+0.2
plant
Stem-Atlantic
-0.3
+0.1
-0.2
N.D.
+0.2
plant
Stem-Atlantic
-0.1
+0.2
-0.3
N.D.
-0.1
control
LB
-0.3
+0.1
-0.2
N.D.
+0.2
plant
Upstate
-0.1
-0.1
-0.4
N.D.
+0.3
control
LB
+0.1
+0.1
+0.0
N.D.
-0.3
plant
Stem-Upstate
-0.1
+0.2
-0.3
N.D.
+0.2
plant
Stem-Upstate
+0.3
-0.2
-0.0
N.D.
-0.1
plant
Upstate
-0.3
+0.1
+0.1
N.D.
+0.2
plant
Stem-Norland
+0.2
+0.4
-0.3
N.D.
-0.2
stress
1.88mM_PTB
-0.1
+0.3
-0.1
N.D.
+0.1
plant
Norland
+0.1
+0.1
-0.2
N.D.
+0.2
plant
Stem-Norland
-0.2
+0.1
+0.1
N.D.
+0.2
control
PDB
+0.0
+0.2
-0.2
N.D.
+0.2
plant
Stem-Norland
-0.3
+0.0
+0.3
N.D.
+0.2
plant
Stem-Norland
+0.1
+0.4
-0.3
N.D.
+0.1
plant
Stem-Upstate
+0.0
-0.2
+0.3
N.D.
+0.1
plant
Atlantic
+0.1
+0.1
-0.2
N.D.
+0.4
plant
Stem-Upstate
-0.1
+0.2
+0.1
N.D.
+0.3
plant
Stem-Norland
-0.1
+0.0
+0.3
N.D.
+0.2
plant
Stem-Upstate
+0.1
+0.4
+0.2
N.D.
-0.1
plant
Stem-Upstate
+0.4
+0.0
+0.5
N.D.
+0.6
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