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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS00260 and DZA65_RS00265 are separated by 489 nucleotides
DZA65_RS00265 and DZA65_RS00270 are separated by 75 nucleotides
DZA65_RS00270 and DZA65_RS00275 are separated by 166 nucleotides
DZA65_RS00275 and DZA65_RS00280 are separated by 105 nucleotides
DZA65_RS00260: DZA65_RS00260 - DUF3053 domain-containing protein, at 62,153 to 62,863
_RS00260
DZA65_RS00265: DZA65_RS00265 - PTS mannitol transporter subunit IICBA, at 63,353 to 65,260
_RS00265
DZA65_RS00270: DZA65_RS00270 - mannitol-1-phosphate 5-dehydrogenase, at 65,336 to 66,484
_RS00270
DZA65_RS00275: DZA65_RS00275 - MltR family transcriptional regulator, at 66,651 to 67,181
_RS00275
DZA65_RS00280: DZA65_RS00280 - HAMP domain-containing protein, at 67,287 to 69,173
_RS00280
Group
Condition
DZA65
_RS00260
DZA65
_RS00265
DZA65
_RS00270
DZA65
_RS00275
DZA65
_RS00280
plant
Stem-Norland
-0.6
-0.2
-0.8
-0.4
-0.1
plant
Stem-Norland
-0.7
+0.1
-0.1
-0.8
-0.3
plant
Stem-Upstate
-0.3
+0.2
-0.9
-0.7
+0.0
plant
Stem-Atlantic
-0.5
-0.3
+0.0
-0.6
-0.2
plant
Stem-Atlantic
-0.4
+0.0
-0.3
-0.5
-0.1
plant
Stem-Norland
-0.4
+0.0
-0.4
-0.4
-0.2
plant
Stem-Atlantic
-0.2
-0.1
-0.2
-0.6
-0.1
plant
Stem-Norland
-0.2
-0.0
-0.5
-0.6
+0.2
plant
Stem-Atlantic
-0.2
-0.2
-0.0
-0.5
-0.1
plant
Stem-Norland
-0.5
-0.1
-0.1
-0.3
-0.1
plant
Atlantic
-0.1
-0.1
-0.1
-0.5
-0.1
plant
Stem-Atlantic
-0.3
-0.2
+0.1
-0.4
-0.2
plant
Stem-Norland
-0.2
+0.0
-0.2
-0.5
-0.1
plant
Stem-Upstate
-0.2
-0.1
-0.3
-0.4
-0.0
plant
Stem-Norland
-0.5
+0.1
-0.0
-0.4
-0.0
plant
Stem-Upstate
-0.0
+0.1
-0.3
-0.5
-0.1
carbon source
M9+glycerol
+0.0
+0.0
-0.4
-0.6
+0.1
control
LB
+0.1
-0.1
-0.4
-0.4
+0.1
plant
Stem-Upstate
-0.1
+0.0
+0.3
-0.9
+0.0
plant
Stem-Atlantic
-0.5
+0.1
+0.3
-0.3
-0.2
carbon source
M9+glycerol
+0.4
+0.2
-0.3
-0.9
+0.1
plant
Upstate
+0.0
-0.1
-0.1
-0.5
+0.2
plant
Stem-Atlantic
-0.3
+0.1
+0.2
-0.2
-0.1
plant
Stem-Upstate
-0.2
+0.1
+0.0
-0.7
+0.3
plant
Atlantic
+0.1
-0.3
-0.4
+0.1
+0.1
stress
3.75mM_PTB
-0.1
+0.0
+0.3
-0.5
-0.1
plant
Stem-Upstate
-0.0
-0.0
+0.2
-0.8
+0.3
plant
Upstate
-0.2
-0.1
-0.3
+0.2
+0.2
plant
Upstate
-0.2
+0.2
-0.2
+0.1
+0.1
plant
Stem-Norland
-0.2
+0.2
-0.1
+0.1
+0.3
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