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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dianthicola ME23
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DZA65_RS00185 and DZA65_RS00190 are separated by 353 nucleotides
DZA65_RS00190 and DZA65_RS00195 are separated by 101 nucleotides
DZA65_RS00195 and DZA65_RS00200 are separated by 499 nucleotides
DZA65_RS00200 and DZA65_RS00205 overlap by 4 nucleotides
DZA65_RS00185: DZA65_RS00185 - valine--pyruvate transaminase, at 42,385 to 43,641
_RS00185
DZA65_RS00190: DZA65_RS00190 - aldose 1-epimerase family protein, at 43,995 to 45,203
_RS00190
DZA65_RS00195: DZA65_RS00195 - glyoxylate/hydroxypyruvate reductase GhrB, at 45,305 to 46,267
_RS00195
DZA65_RS00200: DZA65_RS00200 - N-acetyltransferase, at 46,767 to 47,222
_RS00200
DZA65_RS00205: DZA65_RS00205 - DNA-3-methyladenine glycosylase I, at 47,219 to 47,779
_RS00205
Group
Condition
DZA65
_RS00185
DZA65
_RS00190
DZA65
_RS00195
DZA65
_RS00200
DZA65
_RS00205
plant
Stem-Upstate
-0.1
+0.0
+0.1
-0.5
-1.1
plant
Upstate
-0.2
-0.1
-0.1
-0.1
-0.4
plant
Stem-Upstate
-0.2
-0.1
+0.2
-0.1
-0.6
carbon source
M9+sucrose
-0.3
-0.2
+0.0
+0.1
-0.4
control
LB
-0.1
-0.3
+0.0
-0.1
-0.2
plant
Atlantic
-0.3
-0.2
+0.3
-0.1
-0.3
stress
1.88mM_PTB
-0.2
+0.0
-0.0
+0.0
-0.4
plant
Stem-Norland
-0.2
-0.0
-0.3
-0.2
+0.2
carbon source
M9+starch
-0.2
-0.1
+0.1
+0.1
-0.4
plant
Upstate
-0.2
-0.1
+0.0
+0.1
-0.2
plant
Atlantic
-0.2
-0.4
-0.0
+0.1
+0.0
carbon source
M9+glycerol
-0.0
+0.0
+0.1
-0.2
-0.3
plant
Stem-Upstate
+0.1
-0.2
-0.2
-0.5
+0.5
control
PDB
-0.0
-0.2
+0.2
-0.3
-0.1
plant
Norland
-0.2
-0.1
+0.1
+0.0
-0.3
plant
Norland
-0.2
+0.1
+0.1
+0.1
-0.4
carbon source
M9+polygalacturonate
-0.3
-0.0
+0.2
+0.1
-0.2
plant
Upstate
-0.1
-0.2
+0.3
+0.1
-0.2
plant
Stem-Norland
+0.1
-0.3
-0.2
-0.0
+0.2
plant
Stem-Norland
+0.2
+0.1
-0.2
-0.1
-0.1
plant
Stem-Norland
-0.2
+0.2
+0.3
-0.1
-0.1
plant
Stem-Upstate
+0.2
-0.1
+0.1
+0.2
-0.3
stress
3.75mM_PTB
+0.1
+0.2
+0.2
-0.0
-0.2
control
LB
+0.2
+0.2
-0.2
+0.0
+0.1
plant
Stem-Atlantic
+0.1
-0.0
+0.2
-0.3
+0.4
plant
Stem-Norland
-0.1
+0.0
+0.0
+0.2
+0.3
plant
Upstate
-0.2
-0.0
+0.3
+0.2
+0.3
plant
Stem-Atlantic
+0.1
+0.1
+0.2
+0.1
+0.1
plant
Stem-Norland
+0.0
+0.1
-0.1
+0.3
+0.7
plant
Stem-Atlantic
+0.1
-0.0
+0.4
+0.2
+0.3
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