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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Number of genes on each side:
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS20855 and DDA3937_RS20860 are separated by 13 nucleotides
DDA3937_RS20860 and DDA3937_RS23375 are separated by 112 nucleotides
DDA3937_RS23375 and DDA3937_RS20865 overlap by 41 nucleotides
DDA3937_RS20865 and DDA3937_RS20870 are separated by 341 nucleotides
DDA3937_RS20855: DDA3937_RS20855 - acyl carrier protein, at 4,738,998 to 4,739,264
_RS20855
DDA3937_RS20860: DDA3937_RS20860 - 3-oxoacyl-ACP synthase, at 4,739,278 to 4,740,210
_RS20860
DDA3937_RS23375: DDA3937_RS23375 - hypothetical protein, at 4,740,323 to 4,740,592
_RS23375
DDA3937_RS20865: DDA3937_RS20865 - amino acid adenylation domain-containing protein, at 4,740,552 to 4,745,018
_RS20865
DDA3937_RS20870: DDA3937_RS20870 - HAD family hydrolase, at 4,745,360 to 4,746,052
_RS20870
Group
Condition
DDA3937
_RS20855
DDA3937
_RS20860
DDA3937
_RS23375
DDA3937
_RS20865
DDA3937
_RS20870
control
PDB
-2.6
+0.2
+0.4
+0.1
+0.2
carbon source
M9+sucrose
-0.7
-0.4
-0.5
+0.1
-0.1
carbon source
M9+glycerol
-1.4
-0.2
-0.3
+0.0
+0.3
carbon source
M9+glucose
-0.9
-0.4
-0.1
+0.0
+0.0
plant
Atlantic
-1.0
+0.2
-0.4
+0.1
-0.2
carbon source
M9+starch
+0.5
-0.2
-1.0
+0.1
-0.7
plant
Stem-Norland
-0.5
-0.6
-0.1
+0.0
-0.2
plant
Atlantic
-0.8
+0.3
-1.0
-0.0
+0.2
carbon source
M9+glucose
-1.0
-0.4
-0.1
+0.1
+0.2
carbon source
M9+glucose+arginine
-0.8
-0.3
-0.4
+0.1
+0.2
carbon source
M9+sucrose
-1.0
-0.1
+0.3
-0.0
-0.3
control
PDB
-0.6
+0.1
-0.4
+0.0
-0.1
plant
Norland
+0.1
+0.3
-0.7
-0.1
-0.5
plant
Upstate
-0.4
+0.3
+0.1
-0.1
-0.5
control
PDB
-0.8
-0.3
+0.4
-0.1
+0.2
carbon source
M9+glycerol
-1.1
+0.2
+0.2
-0.1
+0.4
carbon source
M9+glycerol
+0.6
-0.3
-0.4
-0.1
-0.2
plant
Atlantic
-0.8
+0.0
+0.6
-0.0
-0.0
plant
Stem-Norland
-0.6
-0.1
+0.7
-0.0
-0.1
plant
Norland
-1.1
+0.4
+0.5
+0.1
-0.1
plant
Stem-Norland
-0.2
-0.2
+0.7
+0.1
-0.5
control
PDB
-0.4
+0.5
+0.1
+0.0
-0.3
control
PDB
-0.4
-0.3
+0.8
+0.2
+0.1
carbon source
M9+glycerol
+0.6
+0.3
-0.3
-0.1
-0.1
plant
Stem-Norland
-0.3
+0.2
+0.4
-0.1
+0.3
plant
Atlantic
-0.6
+0.1
+0.9
+0.1
+0.5
plant
Stem-Norland
+0.3
-0.2
+1.0
+0.0
+0.2
plant
Upstate
+0.5
+0.0
+0.8
-0.1
+0.0
plant
Stem-Atlantic
+0.3
+0.1
+0.8
+0.1
+0.5
plant
Stem-Atlantic
+0.9
+0.2
+0.6
-0.0
+0.1
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DDA3937_RS23375
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