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Cofit
Protein
Homologs
Fitness for 5 genes in
Dickeya dadantii 3937
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
DDA3937_RS18855 and DDA3937_RS18860 are separated by 464 nucleotides
DDA3937_RS18860 and DDA3937_RS22485 overlap by 4 nucleotides
DDA3937_RS22485 and DDA3937_RS22490 are separated by 81 nucleotides
DDA3937_RS22490 and DDA3937_RS23355 are separated by 318 nucleotides
DDA3937_RS18855: DDA3937_RS18855 - Fe-S cluster assembly protein NifU, at 4,307,293 to 4,308,120
_RS18855
DDA3937_RS18860: DDA3937_RS18860 - glycoside hydrolase family protein, at 4,308,585 to 4,309,388
_RS18860
DDA3937_RS22485: DDA3937_RS22485 - hypothetical protein, at 4,309,385 to 4,309,789
_RS22485
DDA3937_RS22490: DDA3937_RS22490 - Hcp family type VI secretion system effector, at 4,309,871 to 4,310,350
_RS22490
DDA3937_RS23355: DDA3937_RS23355 - hypothetical protein, at 4,310,669 to 4,311,031
_RS23355
Group
Condition
DDA3937
_RS18855
DDA3937
_RS18860
DDA3937
_RS22485
DDA3937
_RS22490
DDA3937
_RS23355
plant
Stem-Atlantic
-0.1
-0.7
-1.6
-0.3
-0.8
control
PDB
+0.6
-0.0
-2.4
-0.5
-0.4
plant
Upstate
+0.1
-0.2
-2.1
-0.2
-0.4
control
PDB
-0.6
-0.2
-1.5
-0.3
-0.1
plant
Norland
+0.0
-0.3
-2.3
+0.0
+0.0
control
PDB
+0.1
-1.1
+0.6
-0.9
-0.6
control
PDB
-0.2
-0.8
+0.4
-0.0
-1.2
plant
Norland
+0.4
+0.0
-1.3
-0.3
-0.6
control
PDB
-0.8
-0.7
+0.3
-0.2
-0.4
carbon source
M9+polygalacturonate
-0.1
+0.1
-1.5
-0.3
+0.0
carbon source
M9+starch
-0.0
-0.0
-1.2
-0.3
-0.1
carbon source
M9+glucose
-0.2
-0.1
-0.8
-0.5
-0.1
carbon source
M9+starch
-0.3
-0.3
-0.6
-0.3
-0.1
plant
Upstate
-0.1
-0.2
-1.2
+0.0
-0.1
control
PDB
-0.2
-0.5
-0.4
-0.4
+0.0
plant
Upstate
-0.3
+0.2
-1.6
+0.1
+0.1
carbon source
M9+sucrose
-0.1
-0.0
-0.6
-0.4
-0.3
carbon source
M9+glucose+arginine
+0.0
-0.2
-1.2
-0.1
+0.1
plant
Upstate
+0.2
-0.2
-1.1
+0.1
-0.4
plant
Atlantic
+0.2
-0.2
-1.2
+0.1
-0.1
carbon source
M9+glucose+arginine
-0.2
-0.4
-0.6
-0.2
+0.4
plant
Atlantic
+0.6
+0.4
-1.7
-0.2
-0.2
carbon source
M9+glycerol
-0.3
+0.2
-1.1
-0.1
+0.3
plant
Stem-Atlantic
+0.6
+0.3
-1.6
+0.2
-0.2
plant
Norland
+0.3
+0.5
-1.2
-0.3
+0.0
plant
Stem-Norland
+0.0
-0.2
-0.9
+0.3
+0.2
plant
Atlantic
+0.2
-0.0
-0.9
-0.2
+0.5
plant
Stem-Norland
-0.0
-0.5
-0.6
+0.5
+0.3
plant
Stem-Norland
-0.3
-0.3
+0.5
-0.4
+0.6
plant
Norland
+1.2
-0.1
-0.1
+0.3
+0.3
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